Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00289 ATGGCACCGGCGTTCCAGGAAGCTGGAGGCGGCGACGAAGACGCCACCGTCGACGTGCACACCACGCGTGGCACGCCCATCCGCTACCTTCCCCTCGACCATCTCTACTCCGCCACGTCGCCCTGCCGCGTCACGGCAAGCGGCTCCTCCAACGTCATGTCCAAGAAGGTCAAGGCTCGAAAACTCACCACTCTCGCGGCGCATCATCATTTCGGCAACCACGACCACAAGAAGACGACGTCGTCCTCATCGTCCTCCTCCCAGCCTCCTTCTTCCAAGCCTCCCCTGCTCTTCGTCTACTCGCGCCGCCGCAAGAGGCATTCCCCTTCCACGGCGCCGTTTTACGATTCGCTGTGCAAAACCGAGGGCAAGGTCAATGCGGATGAGAATGAGGATGAGAAAAGGCTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGCGTGGATTTGAACACTGCGATTGGAGATGCTGACGGACCTCGATTGAGGGAATGCCGAAACCAATTTGGGAATTCTGGTGCTGCTGGGAATGTTAAGTGTGGTTCCTTGGAGAATTTGCCGAAAATGTCGCCTGATTCTCGCCCTGTGAAGAAATGGGTCGGGTTGAGTTTTGATGATGCTGATCCTGAGGTGTTTGTTGGATTAAGATGCAAGGTTTATTGGCCCATGGATTTGAAAGCGTACACTGGCTATGTCAGAGGTTATGATAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGAGATGAGGAAAATTTAATTCTTTCAAATGAAAATATTAGATTCCATGTTTCACGTGATGAGGTGAAACATTTAAATTTGAATCTTGCCAAAGTTCGTGACAACAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCAATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCTAAGCTAACAGGCCATGCAATGTGGCCGGCTGTTGTTTTGGACGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGAGTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGATTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACCGATCTACACTCAAAATGCAAGAAACATAGTTTCATTGAAGGCTTAGAAGAGGCAAAAAGATATTTAAATGAACAGAAGCTTCCTTTGGAGATGCTAGAGTTGCAGAAAAGATGTGCAGCTGATAATTGTAACAATGTAAGTAGAGAGGAAGGAGGATGTACAGATTCAGGCGATGATTGTTTAAATGGCGAGAGGACTTTAATGGCTCTGGAAAATGTTGAAACTTTTCCTTACGAATTAGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATTCAGAGATGGAAGGTTTATCTGGCCTGAAGGGTACACAGCAGTGAAGAAGTTTACTTCAGTTGCTGACCCAGAAGTTTTTGCTCCTTACAAGATGGAGGTGTTGAGAGATCCAGAGTCCAAAGTTCGTCCTCTATTTAGAGTGACAGTTGATGGTGGCGAGCAGTTCAGCGGTAATACTCCATCTGCTTGTTGGAGCGAGATATTCAAAAAGATAAAAAAAATGGAAAAGAATGCTTCTGAAGGTAGTCTTGCTAAAGGTGGGGTAGAAAAGGGCTACTTATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAGGTGCTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAGGAAATCTTGCAAGTTAGGTTCCCAAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAACGTGTGCCACATGGATGAGGAGTATGAGAACAATCTATTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTAGAACCTGTTAACGGGGTGCTATGGTTATGCAACTTATGTCGTTCCGGAGCTCCACCTCCACCTTGCTGCTTGTGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGTTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATTAGTAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAAAATGAGGATAGGCTCTATCTACTCTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAGACATAGGCAGCCGTCCAATGAACATTCTGTTGCTGATGATCGTATAGTTCGAGTAGCTGGTCTATGTTCAGACTATGAACCACCGCCCAATCCATCTGGTTGTGCTAGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCGGCTGCATCGTTGAAACGGTTGTTCGTGGAGAATCAGCCTTACTTAGTAGGTGGATACTGCCAGCATGGATCATTAAATGACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTTTTTTGTAGCCAACAAAGGCTAAGAACATCTCTGATTGACGCATCAAACAACATACTTTCTATCTCTGAAAAATATGAGTACATGAGGGAAACCTTTCGGAAGAGGCTCGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCAATAGCAGACCGAAGAGAACACTTTATATACAATTCATTGGTGGGTGCTGGAACATATATGTTTCGGATCGACGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATAAACCACTCTTGTGCACCAAATTGCTATTCAAGAGTAATCAGTGTTAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTGAACGATACGGAAGCAGAAGAGCGAGTTGCTACCCTTTATGCACCTCGAAGGGAATTAATAGATTGGAGAGGAGAATGA 3276 0.446 MAPAFQEAGGGDEDATVDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTTLAAHHHFGNHDHKKTTSSSSSSSQPPSSKPPLLFVYSRRRKRHSPSTAPFYDSLCKTEGKVNADENEDEKRLLKKRKIGSTELERLGVDLNTAIGDADGPRLRECRNQFGNSGAAGNVKCGSLENLPKMSPDSRPVKKWVGLSFDDADPEVFVGLRCKVYWPMDLKAYTGYVRGYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLNLNLAKVRDNNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMSLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLNEQKLPLEMLELQKRCAADNCNNVSREEGGCTDSGDDCLNGERTLMALENVETFPYELGDLQILSLGKIVEDSAFRDGRFIWPEGYTAVKKFTSVADPEVFAPYKMEVLRDPESKVRPLFRVTVDGGEQFSGNTPSACWSEIFKKIKKMEKNASEGSLAKGGVEKGYLSGSDMFGFSNPKVLKLIQGLSKSKISSRKSCKLGSQRHNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKRHRQPSNEHSVADDRIVRVAGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNDPEPSGRGVCSKFFCSQQRLRTSLIDASNNILSISEKYEYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERVATLYAPRRELIDWRGE 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00289 1091 SMART set_7 927 1051 IPR001214 GO:0005515
Viun5g00289 1091 MobiDBLite consensus disorder prediction 68 96 - -
Viun5g00289 1091 Pfam PHD-zinc-finger like domain 679 800 - -
Viun5g00289 1091 Coils Coil 407 427 - -
Viun5g00289 1091 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
Viun5g00289 1091 Gene3D - 213 268 - -
Viun5g00289 1091 FunFam Histone-lysine N-methyltransferase 675 803 - -
Viun5g00289 1091 Pfam PHD-finger 638 672 - -
Viun5g00289 1091 SUPERFAMILY Tudor/PWWP/MBT 306 406 - -
Viun5g00289 1091 SMART fyrc_3 519 612 IPR003889 GO:0005634
Viun5g00289 1091 SMART fyrn_3 467 511 IPR003888 GO:0005634
Viun5g00289 1091 ProSiteProfiles Extended PHD (ePHD) domain profile. 677 801 IPR034732 -
Viun5g00289 1091 ProSiteProfiles FYR domain FYRN motif profile. 453 511 IPR003888 GO:0005634
Viun5g00289 1091 SMART PWWP_4 310 373 IPR000313 -
Viun5g00289 1091 SUPERFAMILY FYVE/PHD zinc finger 617 687 IPR011011 -
Viun5g00289 1091 Gene3D - 299 411 - -
Viun5g00289 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 803 IPR013083 -
Viun5g00289 1091 ProSitePatterns Zinc finger PHD-type signature. 626 671 IPR019786 -
Viun5g00289 1091 ProSiteProfiles Zinc finger PHD-type profile. 623 674 IPR019787 -
Viun5g00289 1091 Pfam SET domain 938 1044 IPR001214 GO:0005515
Viun5g00289 1091 CDD SET_SETD1-like 915 1063 - -
Viun5g00289 1091 PANTHER PHD FINGER PROTEINS 50 1075 - -
Viun5g00289 1091 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 605 668 IPR002219 -
Viun5g00289 1091 Pfam F/Y rich C-terminus 517 590 IPR003889 GO:0005634
Viun5g00289 1091 MobiDBLite consensus disorder prediction 78 94 - -
Viun5g00289 1091 ProSiteProfiles SET domain profile. 927 1045 IPR001214 GO:0005515
Viun5g00289 1091 Gene3D - 454 593 - -
Viun5g00289 1091 ProSiteProfiles FYR domain FYRC motif profile. 515 601 IPR003889 GO:0005634
Viun5g00289 1091 CDD Tudor_Agenet_AtEML-like 217 267 - -
Viun5g00289 1091 CDD ePHD_ATX1_2_like 686 800 IPR041956 -
Viun5g00289 1091 Pfam PWWP domain 313 400 IPR000313 -
Viun5g00289 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 671 IPR013083 -
Viun5g00289 1091 SMART PHD_3 735 801 IPR001965 -
Viun5g00289 1091 SMART PHD_3 625 672 IPR001965 -
Viun5g00289 1091 FunFam Histone-lysine N-methyltransferase 860 1084 - -
Viun5g00289 1091 Pfam F/Y-rich N-terminus 459 508 IPR003888 GO:0005634
Viun5g00289 1091 Gene3D SET domain 883 1079 IPR046341 -
Viun5g00289 1091 SUPERFAMILY SET domain 922 1064 IPR046341 -
Viun5g00289 1091 CDD PWWP_AtATX1-like 311 406 - -
Viun5g00289 1091 CDD PHD_ATX1_2_like 625 671 IPR042010 -
Viun5g00289 1091 ProSiteProfiles PWWP domain profile. 312 375 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00289 Viun-Chr5 1656131 1669266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00289 626 771 C2H2 Transcription Factor Family AT3G14740 39.735 5.23e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun5g00289 zf-HC5HC2H_2 4.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00289 - - gmx:100806736 1991.08