Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00276 ATGGCAGAAAGTGTTGTTAGCTTCCTGGTGCAGAACTTGTCAAACCTACTTGACAGTGAAATAAAGCTTCTTTCTGGTGTGGAAGGAAAAGTTAAGTCCTTGTGTAATGAATTGAAATTCATGGACATCTTTCTCAAGAGCTCAGAGGGGAAATACAAAGACGCAATGGTGAAAGAAGTGGTGACCCAAATAAGAGATGTCGCCTACAAAGCAGAAGATGTGGTGGACACATACATTCTCAACATCGCCAAACACAAACGTAGAAACAAACTCTGTCGATTATTCCACCTCAAAGAAAAATTCACTATTCCCCATGAAATCGATGCTGAGATAGAGGAGATCAAGAGTCGTATCGATGAGATCTATAAAAACAAGGAGAGGTATGGCATCAAAGAAGGTGAGTTCCAAAGCGAAGAAACAGAATGGCACCGCAAAAGGAGGATGTATGTGGAAGAAGAAGATGTAGTGGGCTTAGTAAATGACTCCAACATTGTGATTGAACAACTCCAGAAAGATGATGTGCGTCTTAATGTTGCTTCTATATTAGGAATGGGAGGACTGGGTAAAACCACTCTTGCTCGTAAGATCTTTAACAAAGACAATGTAAAGGAGCTATTTCATTGTCGTGCATGGGGTAATGTGTCTAACGATTACAGACCCAAGGAGCTTTTTCTAAGTCTTCTCAGGAGTTTAAATCTTTCTGAATTTGAAAAAAACGAGGAGGATCTGAACAAAAAAAGCGAGGAGGATCTGAAGAAGGAGGTAGCCAAATGGCTAAAGGGGAAGAAATATCTGGTAGTGCTCGATGATATCTGGGAAACCCGGGTATGGGATGACATAAAAGGAGCCTTTCAAGATGAGAAAAGAGGTAGCAGAATATTGATCACAAGTCGTAACAAGGATGTTGCACGCTATTCAGGAACCACTTCTCCATACGAACTTCCGTTCCTGACCGAAGATCAAAGTTGGGAACTATTTTGTAAAAAGGTGTTTAGAGATGAAGAATGCCCCTCTGATTTAGAGCATTTGGGTAGATCCATTGCGAAAAGTTGTGGGGGTTTACCACTTGCGATTGTGGTGTTAGGTGGGGTGTATGCGACGAAGGAGAAGTCAGAAAGAGAGTGGTTGAGAATGAAGGAAATGAGAGGGCATCCAACTGAGGACAAGAGTGAGGTGATGGATATACTGAGGTTGAGTTACGACAGCTTGCCTCCAAAGCTAAAGCCTTGTTTTTTATATTTTGGAATGTATCCTGAAGATTATGAGATGAATGCAAGAGAAATGATCCGACTGTGGGTAGCAGAAGGGTTGGTGAAACCGCATGAAGACGCAGAGCCTGAAGTTGTAGCTGACTTTTACTTGGATGAACTTGTGGATCGAAGCTTAGTGCAAGTGACTCGTAGGAGGACTGATGGGGGTGTGAAGATATGTCAGCTTCATGATCTTCTCCGTGATCTCTGCATATCAGAGAGCAAATCCAACAAGTTTCTACAGGTTTTGAAAACGTCCAATATTGACACCTTGAGCGATACCAATCCACGTAGGTTGTCCCTGCAGTGCCAACCGCAGTCTAATATCTCTGCTGTGTCATTTCACAAATCAATGTCAAGCACTCGCTCTGTGATCATTTTTACTAAACAAGGTAAGTTGATGAATGATTTTTTGAAAAGGTTATTGTTAGCCCGAGTTATTCATGGTTTTTTTCCACCATTCTACTACATTTCCTTTTCCCACCATTACAAGAGGATGATCCATATAAGATACTTGAAAATATGTGTCATCAGTGTTCCAGCTTGCGTATGCAACCTCTGGAATTTAGAAACACTATTTGTACGGTACACAAAGACAGTGTCCAGTGAAATTTGGAAGCTGAAACGACTGAGACATCTTCACTTAGAAGGGAGAGGTATGTTACCTAAGTTGCCTAACGGAACTATATTAGAGAATCTCCGAACCCTTGTGTTGTCCCGTTATTGTGGTTCAAAAATGATTTCCTTGTTGAAGAGTGGCATATTTCCTAGGTTGGTAAAATTAGATTTAATAAATAGGGAAGTACCTGATTTGTTACGTGAAGTAATTTCATTATCTAATCTAGTAAACCTAAGCCATTTTAGTCTAAGAGGATTTGACATTCAACGTCTTCCATCAGACACCAATGCGTTTCCATCAAAACTTACCAAGATAACCTTTGAATCGATAGAGGGGGATGCAAGCCCTTTGATGAAGACACTAAGTCAACTTCCCAACCTTCAAATTTTGAAACTGTTAGAAGACTATTTTCGTGTGCTGCTTAATATTGATGTTGGCAAGGGAGAATTTCCTAAACTTCAAGTGTTTCATATGAGAAAGTTGCATAGCATAAAGTCATGGAAATTAGAAGAAGGTGCAATGCCTTGTCTTCGACATTTGCACATTACAGATTGTTCTAGTTTGTTTGAGCTTCCCCAACAGCTTTGGTCGTTGAGAACCTTGCAACTTGTGCGTATTGTGAGACCCTCCCCACAATTGGCTTCCACCCTCCAAAATGTGGAGTTCAACAACAATTGTAAACTCATATTGGAACAAATCTCACTCCCTTAA 2580 0.4066 MAESVVSFLVQNLSNLLDSEIKLLSGVEGKVKSLCNELKFMDIFLKSSEGKYKDAMVKEVVTQIRDVAYKAEDVVDTYILNIAKHKRRNKLCRLFHLKEKFTIPHEIDAEIEEIKSRIDEIYKNKERYGIKEGEFQSEETEWHRKRRMYVEEEDVVGLVNDSNIVIEQLQKDDVRLNVASILGMGGLGKTTLARKIFNKDNVKELFHCRAWGNVSNDYRPKELFLSLLRSLNLSEFEKNEEDLNKKSEEDLKKEVAKWLKGKKYLVVLDDIWETRVWDDIKGAFQDEKRGSRILITSRNKDVARYSGTTSPYELPFLTEDQSWELFCKKVFRDEECPSDLEHLGRSIAKSCGGLPLAIVVLGGVYATKEKSEREWLRMKEMRGHPTEDKSEVMDILRLSYDSLPPKLKPCFLYFGMYPEDYEMNAREMIRLWVAEGLVKPHEDAEPEVVADFYLDELVDRSLVQVTRRRTDGGVKICQLHDLLRDLCISESKSNKFLQVLKTSNIDTLSDTNPRRLSLQCQPQSNISAVSFHKSMSSTRSVIIFTKQGKLMNDFLKRLLLARVIHGFFPPFYYISFSHHYKRMIHIRYLKICVISVPACVCNLWNLETLFVRYTKTVSSEIWKLKRLRHLHLEGRGMLPKLPNGTILENLRTLVLSRYCGSKMISLLKSGIFPRLVKLDLINREVPDLLREVISLSNLVNLSHFSLRGFDIQRLPSDTNAFPSKLTKITFESIEGDASPLMKTLSQLPNLQILKLLEDYFRVLLNIDVGKGEFPKLQVFHMRKLHSIKSWKLEEGAMPCLRHLHITDCSSLFELPQQLWSLRTLQLVRIVRPSPQLASTLQNVEFNNNCKLILEQISLP 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00276 859 CDD RX-CC_like 2 121 IPR038005 -
Viun5g00276 859 Gene3D Ribonuclease Inhibitor 574 850 IPR032675 -
Viun5g00276 859 Gene3D - 135 310 IPR027417 -
Viun5g00276 859 PRINTS Disease resistance protein signature 178 193 - -
Viun5g00276 859 PRINTS Disease resistance protein signature 258 272 - -
Viun5g00276 859 PRINTS Disease resistance protein signature 351 365 - -
Viun5g00276 859 PRINTS Disease resistance protein signature 795 811 - -
Viun5g00276 859 PANTHER DISEASE RESISTANCE PROTEIN RP 42 810 IPR044974 GO:0006952
Viun5g00276 859 Pfam NB-ARC domain 164 401 IPR002182 GO:0043531
Viun5g00276 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 414 IPR027417 -
Viun5g00276 859 Gene3D - 316 404 IPR042197 -
Viun5g00276 859 FunFam Probable disease resistance protein At1g61300 137 311 - -
Viun5g00276 859 Pfam Rx N-terminal domain 5 90 IPR041118 -
Viun5g00276 859 SUPERFAMILY L domain-like 470 827 - -
Viun5g00276 859 Gene3D - 406 489 IPR036388 -
Viun5g00276 859 FunFam Probable disease resistance protein At1g63360 400 489 - -
Viun5g00276 859 Gene3D - 5 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00276 Viun-Chr5 1592581 1596947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00276 169 757 WRKY Transcription Factor Family AT5G45050 23.700 1.97e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00276 - - gmx:100787796 965.296