Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00275 ATGGCAGAAAGTGTTGTTAGCTTCCTGGTGCAGAACTTGTCAAACCTACTTGACAGTGAAATAAAGCTTCTTTCTGGTGTGGAAGGAAAAGTTAAGTCCTTGTGTAATGAATTGAAATTCATGGACATCTTTCTCAAGAGCTCAGAGGGGAAATACAAAGACGCAATGGTGAAAGAAGTGGTGACCCAAATAAGAGATGTCGCCTACAAAGCAGAAGATGTGGTGGACACATACATTCTCAACATCGCCAAACACAAACGTAGAAACAAACTCTGTCGATTATTCCACCTCAAAGAAAAATTCACTATTCCCCATGAAATCGATGCTGAGATAGAGGAGATCAAGAGTCGTATCGATGAGATCTATAAAAACAAGGAGAGGTATGGCATCAAAGAAGGTGAGTTCCAAAGCGAAGAAGCAGTTACAACAGAATGGCGCCGCAAGAGGAGGATTAATGTGGAGGAAGAAGATGTAGTGGGCTTAGTGAATGATTCCAACATTGTGATTCAACAACTCCAGAAAGATTATGTGCGTCTTAATGTTGCTTCTATATTAGGAATGGGAGGACTGGGTAAAACCACTCTTGCTCGTAAGATCTTTAACAAGGACAATGTAAAAAAGTTATTTCCTTGTCGTGCATGGGGTAATGTGTCTAATGATTACAGACCCAAGGAGCTTTTTCTAAGTCTTCTCAGGAGTTTGAATCTTTCTGCATCGGAAAATTTAAGCGAGGAGGATCTGAAGAAGGAGGTAGCCAAAGGGTTGAAGGGGAAGAAATATCTGGTAGTGCTCGATGATATCTGGGAAACCCGGGTATGGGATGACATAAAAGGAGCCTTTCCAGATGAGAAAAGAGGTAGCAGAATATTGATCACAAGTCGTAACAAGGATGTTGCACGCTATTCAGGAACCACTTCTCCATACGATCTTCCGTTCCTGACCGAAGATCAAAGTTGGGAACTATTTTGTAAAAAGGTGTTTAGAGGTGAAGAGTGCCCCTCTGATTTAGAGCTTTTGGGTAGATCCATTGCGAAAAGTTGTGGGGGTTTACCACTTGCGATTGTGGTGTTAGGTGGGGTGTATGCGATGAAGGAGAAGTCAGAAAGAGAGTGGTCGAGAATGAAGAAAATGAGATGGCATCCTACTGAGGATAAGAGTGAGGTGATGGATATATTGAGGTTGAGTTACGACAACTTGCCTCTAAGACTAAAGCCTTGTTTTTTATATTTTGGAATGTATCCTGAAGATTATGAGATGAATGCAAGAGAAATGATCCGACTGTGGGTAGCAGAAGGGTTCGTGAAACCGCATGAAGACGCAGAGCCTGAAGTTGTAGCTGACTTTTACTTGGATGAACTTGTGGATCGAAGCTTAGTGCAAGTGACTCGTAGGAGGACTGATGGGGGTGTGAAGATATGTCAGCTTCATGATCTTCTCCGTGATCTCTGCATATCAGAGAGCGAATCCAGCAAGTTTCTACAGGTTTGGAAAACGTCCAATATTGACACATTGAGCGATACCAATCCTCGTAGGTTGTCCCTGCAGTGCCAACCGCAGTCTAATATCTCTGCTGTGTCATTTCAAAAATCAATGTCAAGCACTCGCTCTATGATCATTTTTACTGACCTAGGTAAGTCTGTGAATGATTTTGTGAAAAGGTTAATGTTAGCCCGAGTTATTGGTAGTTTTCATCCAGCATACTATGTTTCCTTTTCCCACCATTACAAGAGGATGATCCATATAAGATACTTGAAAATATGTGTCATCAGTGTTCCTGCATGCATATGCAACCTTTCGAATTTAGAAACACTATTTGTAATCTATGCAAAGACAGTGTCCAGTGAAATTTGGAAGCTGAAACGACTGAGACATCTTCACTTAGAACGGGGAGATGTTTTACCTATGTTGCCTAACGGAACTATAATTGAGAATCTCCGAACCCTTCAGTTGTTCCATGGGGTTTCAGAAATTATTTCCTTGTTCAAGAGTGGCATATTTCCTAGGTTGGTAAAATTAGGTTTAAGACCTAGGGGGCCAGTATTTCATAGTTTTGGTGAGGTAATTTCACTTTCTAGTGTAGTCAACATAAGCCATTTTACTCTAAAAGCATTTAACGCAGGACGTCTTCCATCAGACACCAATGCTTTTCCATCAAAACTTACCAAGATAACCTTTGAATCGATAGAGGGGGATGCAAGCCCTTTGATGAAGACACTAAGTCAACTTCCCAACCTTCAAATTTTGAAACTGTTAGAACACTTTGGTGTACTGCTTAATATTGATGTTGGCAATGGAGAATTTCCTAAACTTCAAGTCTTTCATATGAGAGGATTGGATCAAATAAAGTCATGGAAATTAGAAGAAGGTGCAATGCCTTGTCTTCAACTTTTGCACATTAAAGATTGTCCTAATTTGTTTGAGCTTCCCCAACAACTTTGGTCGTTGAGGACCTTGCAACTTGTGCATATTGTGGCACCCTCCCAACAATTGGCTACCACCCTCCAAAATGTGAAGTTCAACAACAATTGTAAACTCATATTGGAACAAAATTGA 2553 0.4081 MAESVVSFLVQNLSNLLDSEIKLLSGVEGKVKSLCNELKFMDIFLKSSEGKYKDAMVKEVVTQIRDVAYKAEDVVDTYILNIAKHKRRNKLCRLFHLKEKFTIPHEIDAEIEEIKSRIDEIYKNKERYGIKEGEFQSEEAVTTEWRRKRRINVEEEDVVGLVNDSNIVIQQLQKDYVRLNVASILGMGGLGKTTLARKIFNKDNVKKLFPCRAWGNVSNDYRPKELFLSLLRSLNLSASENLSEEDLKKEVAKGLKGKKYLVVLDDIWETRVWDDIKGAFPDEKRGSRILITSRNKDVARYSGTTSPYDLPFLTEDQSWELFCKKVFRGEECPSDLELLGRSIAKSCGGLPLAIVVLGGVYAMKEKSEREWSRMKKMRWHPTEDKSEVMDILRLSYDNLPLRLKPCFLYFGMYPEDYEMNAREMIRLWVAEGFVKPHEDAEPEVVADFYLDELVDRSLVQVTRRRTDGGVKICQLHDLLRDLCISESESSKFLQVWKTSNIDTLSDTNPRRLSLQCQPQSNISAVSFQKSMSSTRSMIIFTDLGKSVNDFVKRLMLARVIGSFHPAYYVSFSHHYKRMIHIRYLKICVISVPACICNLSNLETLFVIYAKTVSSEIWKLKRLRHLHLERGDVLPMLPNGTIIENLRTLQLFHGVSEIISLFKSGIFPRLVKLGLRPRGPVFHSFGEVISLSSVVNISHFTLKAFNAGRLPSDTNAFPSKLTKITFESIEGDASPLMKTLSQLPNLQILKLLEHFGVLLNIDVGNGEFPKLQVFHMRGLDQIKSWKLEEGAMPCLQLLHIKDCPNLFELPQQLWSLRTLQLVHIVAPSQQLATTLQNVKFNNNCKLILEQN 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00275 850 CDD RX-CC_like 2 121 IPR038005 -
Viun5g00275 850 FunFam Probable disease resistance protein At1g61300 142 307 - -
Viun5g00275 850 Gene3D - 312 400 IPR042197 -
Viun5g00275 850 Gene3D - 143 305 IPR027417 -
Viun5g00275 850 Pfam NB-ARC domain 167 398 IPR002182 GO:0043531
Viun5g00275 850 Gene3D Ribonuclease Inhibitor 567 842 IPR032675 -
Viun5g00275 850 PANTHER DISEASE RESISTANCE PROTEIN RP 42 802 IPR044974 GO:0006952
Viun5g00275 850 Gene3D - 402 485 IPR036388 -
Viun5g00275 850 PRINTS Disease resistance protein signature 347 361 - -
Viun5g00275 850 PRINTS Disease resistance protein signature 789 805 - -
Viun5g00275 850 PRINTS Disease resistance protein signature 254 268 - -
Viun5g00275 850 PRINTS Disease resistance protein signature 181 196 - -
Viun5g00275 850 FunFam Probable disease resistance protein At1g63360 396 485 - -
Viun5g00275 850 Gene3D - 5 108 - -
Viun5g00275 850 Pfam Rx N-terminal domain 5 90 IPR041118 -
Viun5g00275 850 SUPERFAMILY L domain-like 466 822 - -
Viun5g00275 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 410 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00275 Viun-Chr5 1592581 1604406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00275 170 482 WRKY Transcription Factor Family AT5G45050 25.472 2.73e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00275 - - gmx:100787796 933.71