Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00274 ATGACTCAGGCGGTGGAGGTTCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGAGGTTCTGATTCGGAGTGTTTGGCGGGTTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGCATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGCTCCCCTCCTCTTCTTTCTGATTCCAATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAGAGTGCCTGGGAGGATGTTCTCCAATGGGTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTGTGGGAGAACTTTTGCTCCAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCACGGACCTTATGGCCACAAAGTTGCGAGGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAGAGATGGAGTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTTGCCCCACTTATCATGAATTTGATGAAACAGATATTACATTGACATTGAAAGAGTCTTATCTGAAAGCTTGTAAGCTCATGGACAAAGAACTGAAAATGCATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCAAGGGCTGGACCTTATTATTGGAAATATTGGGGACTCGAGAGCTATTTTGGCTACCAGAGATCAAGATGATTCTCTTATTGCTGTTCAGTTGACCGTTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGTCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGTGCATTTGGAGACTTTTGCCTGAAAGACTTTGGATTGATTTCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAATTTGTTGTGCTAGCGACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTGGTGGACATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGTCATGGAGGACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATCCAGATACAGATTTCGAGTCAAATGATACCAAAGGCAAGTTGGTACCGGAGGCATCTGTTGACCAATCTAAGGATTTATCTTGA 1308 0.4495 MTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLSDSNTDGKRRRLRGSSSFDFRVPGRMFSNGSSEVASMFCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHKVARKVRDSFPLKLNAQWDLHHKNRDGVSDHSSANGSYKSEGNGFRLVDEKTCPTYHEFDETDITLTLKESYLKACKLMDKELKMHPDIDCFCSGTTAVTLVKQGLDLIIGNIGDSRAILATRDQDDSLIAVQLTVDLKPNLPREEERIRLRRGRVFSLQNEPEVSRVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQSWRTKYPFCKVDDCAAVCLFFDPDTDFESNDTKGKLVPEASVDQSKDLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00274 435 SUPERFAMILY PP2C-like 85 408 IPR036457 -
Viun5g00274 435 Pfam Protein phosphatase 2C 199 385 IPR001932 -
Viun5g00274 435 ProSiteProfiles PPM-type phosphatase domain profile. 93 407 IPR001932 -
Viun5g00274 435 PANTHER PROTEIN PHOSPHATASE 80 405 IPR015655 GO:0004722|GO:0006470
Viun5g00274 435 FunFam probable protein phosphatase 2C 33 88 410 - -
Viun5g00274 435 Gene3D - 87 408 IPR036457 -
Viun5g00274 435 MobiDBLite consensus disorder prediction 414 435 - -
Viun5g00274 435 CDD PP2Cc 93 407 IPR001932 -
Viun5g00274 435 SMART PP2C_4 83 405 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00274 Viun-Chr5 1586438 1591447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00274 61 408 PP2C-type Phosphatase Gene Family AT1G16220 59.889 1.32e-151 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00274 - - vum:124830906 862.062