Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00263 ATGAGTCTTTCTCGGTTTCAATCGACAGTTTTGAGTTTGCTGATTTCAGTTTCCTGTTTTCTGACATGTTTGGGAAACAATGACGTGCCTGTTCAGTTGAATGATGATGTTCTTGGCTTGATTGTGTTCAAATCAGACCTTCAAGACCCTTCTTCTCATCTTGCTTCATGGAATGAAGACGATGCGAATCCTTGTTCATGGCAGTTCGTGCAGTGCAATCCTCAGAGCGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTGGGATTATCTGGGAAAATTGGAAGAGGGCTTGAGAAGTTGCAGCATCTTACGGTATTGTCCCTTTCTCATAACAACTTGAGTGGGAGTATTAGTCCATCTCTTACTCTTTCCAATACTCTTGAGAGACTCAACCTTAGTCACAATGCTCTTTCTGGTTCAATCCCTACTTCTTTTGTGAATATGAATTCAATCAAGTTTCTTGATCTTTCTCAGAATTCATTCTCGGGACCAATCCCTGAGAATTTTTTTGATACTTGTTCTTCCCTTCATCAGATTTCTCTAGCTAGGAACATGTTTGATGGGCCGGTTCCTGGCTCACTGTCTAGATGTTCCTCATTGAATAGCCTTAATCTTTCCAATAATCGTTTCTCTGGTAATGTGGACTTTAATGGGATTTGGTCACTGACCAGGCTTAGAACTTTGGATCTATCCAACAATGCCTTATCTGGGTCTTTACCTAATGGAGTTTCATCCATACATAACTTGAAGGAGATCTTACTACAAGGTAACCAGTTTTCAGGTCCTTTATCCACTGATATTGGATTCTGCCTGCATCTGAGTAGGTTGGATTTTAGTGATAATCAGTTCAGTGGAGCACTACCTGAGTCACTTGGGAGGCTTAGCTCTTTGAGCTATTTCAAGGCATCAAATAATTTTTTCACCAGCGAATTCCCTCCATGGATTGGTAACCTTACCAGTCTGGAGTACCTAGAGCTGGATCACAATCAGTTCACTGGAAGCATTCCACAGTCAATAGGGGAACTGGGATCACTGTCTCATCTGAGACTTTCAAGTAACAAGCTTGTTGGAACTATTCCATCATCATTAAGTTCCTGCACAAAGTTATCTGTGATCCATCTCAGAGGCAATGGTTTCAATGGCTCCATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATGGACTTGTCCAGAAATGAACTGAGTGGCTCAATTCCAGAAGGATCAAGCAGGCTCTTGGAAACTCTATCAAGCTTGGATCTTTCTGATAACCATCTCCAAGGAAATATCCCTGCAGAAACCGGCCTTCTTTCAAAACTGAGTTATTTGAATCTGTCTTGGAATGATCTTCAATCACAGATGCCTCCAGAATTTGGCCTCCTTCAGAATCTAGCAGTTTTGGACATTCGAAACAGTGCCTTGCGTGGTTCAGTTCCAGCAGATATATGCGACTCAGGCAATTTGGCTGTTCTCCAACTAGATGGAAATTCATTGCAAGGGAATATTCCAGAAGAGATTGGGAATTGTAGCTCTCTTTACTTGCTGAGTTTGTCTCACAATAACTTGACTGGTTCAATTCCAAAGTCCATGTCAAAGCTAAACAAGCTAAAAATCCTCAAACTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAGTCTACTTGCTGTGAACATATCATACAACAGGCTCACAGGAAGGCTTCCCACAGGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTATGCTCACCCTTGTTGCAGGGACCCTGCAAGATGAATGTCCCAAAGCCACTAGTGCTTGACCCAAATGCATATAACAACCAAATAAGCCCTCAAAGGCAAAGAAACGAATCATCTGAGTCCGGATCGGTCCACCGCCACAGGTTCCTCAGCGTATCTGCCATTGTAGCAATATCTGCATCTTTTGTGATTGTATTAGGAGTGATTGCTGTTAGCCTGCTTAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGGAGTCCAGCCACAGGAAAGTTGATCCTGTTTGATTCCCAGTCCTCACCAGATTGGATCGGCAATCCTGAGTCCTTGCTCAACAAGGCATCAGAGATTGGAGAAGGAGTGTTTGGAACCCTCTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATATCCACAAACATAATCCAATATCCAGAAGACTTTGATAGGGAGGTTCGAATCCTAGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTTTTAGTAACTGAGTTTGCACCAAATGGTAGCTTGCAAGCCAAGCTACATGAGAGGCTTCCTTCTAGTCCTCCTCTTTCTTGGCCTTTAAGGTTCAAAATTTTGCTTGGAACAGCAAAAGGGCTTGCTCATTTGCACCATTCTTTCCGTCCACCAATCATACACTACAACATAAAGCCAAGTAATATTCTGCTAGATGAAAATTGCAACCCCAAGATCTCAGATTTCGGGTTAGCTCGGCTTCTGACAAAGCTGGACAGGCATGTGATGAGTAATAGGTTTCAGAGTGCATTAGGGTATGTGGCACCAGAATTGGCATGCCAGAGCCTAAGGGTGAATGAGAAATGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGGAGGCCAGTGGAGTATGGTGAAGACAATGTGCTTATACTGAATGACCATGTGAGGGTGCTGCTTGAGCAAGGTAATGTCTTGGAGTGTGTTGATCAAAGTATGAATGAGTACCCAGAAGATGAGGTATTGCCTGTTCTGAAGCTAGCAATGGTATGCACCTCTCAAATTCCTTCTAGCAGACCAACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTCTGA 3024 0.4306 MSLSRFQSTVLSLLISVSCFLTCLGNNDVPVQLNDDVLGLIVFKSDLQDPSSHLASWNEDDANPCSWQFVQCNPQSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGSISPSLTLSNTLERLNLSHNALSGSIPTSFVNMNSIKFLDLSQNSFSGPIPENFFDTCSSLHQISLARNMFDGPVPGSLSRCSSLNSLNLSNNRFSGNVDFNGIWSLTRLRTLDLSNNALSGSLPNGVSSIHNLKEILLQGNQFSGPLSTDIGFCLHLSRLDFSDNQFSGALPESLGRLSSLSYFKASNNFFTSEFPPWIGNLTSLEYLELDHNQFTGSIPQSIGELGSLSHLRLSSNKLVGTIPSSLSSCTKLSVIHLRGNGFNGSIPEGLFGLGLEEMDLSRNELSGSIPEGSSRLLETLSSLDLSDNHLQGNIPAETGLLSKLSYLNLSWNDLQSQMPPEFGLLQNLAVLDIRNSALRGSVPADICDSGNLAVLQLDGNSLQGNIPEEIGNCSSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLQGPCKMNVPKPLVLDPNAYNNQISPQRQRNESSESGSVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWIGNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISTNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWPLRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENCNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDQSMNEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00263 1007 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Viun5g00263 1007 Pfam Leucine rich repeat 488 547 IPR001611 GO:0005515
Viun5g00263 1007 Pfam Leucine rich repeat 320 378 IPR001611 GO:0005515
Viun5g00263 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 798 1002 - -
Viun5g00263 1007 PRINTS Leucine-rich repeat signature 225 238 - -
Viun5g00263 1007 PRINTS Leucine-rich repeat signature 414 427 - -
Viun5g00263 1007 CDD STKc_IRAK 726 994 - -
Viun5g00263 1007 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 194 288 - -
Viun5g00263 1007 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Viun5g00263 1007 SMART LRR_typ_2 318 341 IPR003591 -
Viun5g00263 1007 SMART LRR_typ_2 222 246 IPR003591 -
Viun5g00263 1007 SMART LRR_typ_2 342 366 IPR003591 -
Viun5g00263 1007 SMART LRR_typ_2 438 461 IPR003591 -
Viun5g00263 1007 SMART LRR_typ_2 100 125 IPR003591 -
Viun5g00263 1007 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Viun5g00263 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 193 - -
Viun5g00263 1007 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Viun5g00263 1007 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00263 1007 FunFam Inactive leucine-rich repeat receptor-like protein kinase 314 607 - -
Viun5g00263 1007 ProSiteProfiles Protein kinase domain profile. 720 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00263 1007 SUPERFAMILY Protein kinase-like (PK-like) 723 1001 IPR011009 -
Viun5g00263 1007 Gene3D Transferase(Phosphotransferase) domain 1 802 1004 - -
Viun5g00263 1007 Pfam Leucine Rich Repeat 224 243 IPR001611 GO:0005515
Viun5g00263 1007 Gene3D Phosphorylase Kinase; domain 1 720 801 - -
Viun5g00263 1007 SUPERFAMILY L domain-like 49 387 - -
Viun5g00263 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 714 797 - -
Viun5g00263 1007 Gene3D Ribonuclease Inhibitor 192 315 IPR032675 -
Viun5g00263 1007 SUPERFAMILY L domain-like 311 589 - -
Viun5g00263 1007 Gene3D Ribonuclease Inhibitor 319 607 IPR032675 -
Viun5g00263 1007 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Viun5g00263 1007 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Viun5g00263 1007 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 33 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00263 Viun-Chr5 1516683 1520317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00263 14 1004 Receptor kinase-like Gene Family AT3G28040 64.151 0.0 1252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun5g00263 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00263 - - pvu:PHAVU_008G017400g 1822.75