Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00261 ATGGATTTTTCTTCTACTTCGATCTCTCACTTCAGAGTCTCTGCGAATTCCTTCCTCTCTCAATACGAACCACTTGCTCTGCTTCTCGTTCCTCTGCTTTCTCTCTTTCTCGCTCACTCGCTTCGCTCCTTCTTACGCCTCCTCTCCGAGAACGGGCTCAAAGCCACGCTCCTAGGGTTTATCATGAACGCCGTCAAATTGGTTCCTGGCGTGAAGGGATACATAGATGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAATCTGATAGCAAATCTAAAAGAGAAGGTTGGAATACAGAGTTACCAAGCACAGGATTAGGGACGTCTGTCCTTGAGAAAATGAGTGAGGAAAAAAATAATGATCCGGTCTGGCAAGGCAAATGCTCCGGTACAGTTTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTGTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGTTTTGAAGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGCAAGGAAAATAGTTCTGGAGGACAAATATGTGGCAACATGACATCGGGCGGGACAGAAAGTATATTATTAGCTGTCAAAACATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTGACAAGAATTTTCAAGCAGATGTGAAAGCGATTCGACGTCATATTAACAAAAATACCATCCTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGATCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTTGATTTTTCTGTTAAAGGCGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGTCTGATTGCTGGTGCCTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAGAAATACAAAAGCAATTATGGAAGGGTCAAGAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAAGCCTGACATGACAATCGTGGCTTTTGGTTCAGATGTTCTTGATATATTTGAAGTCAATGATATTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCCTCCATATCTGTGTTACACTACAACATGTGCCAATTGTTGAAGACTTTCTGAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATCGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1620 0.4265 MDFSSTSISHFRVSANSFLSQYEPLALLLVPLLSLFLAHSLRSFLRLLSENGLKATLLGFIMNAVKLVPGVKGYIDAEKQKVVDKLQSDSKSKREGWNTELPSTGLGTSVLEKMSEEKNNDPVWQGKCSGTVYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKENSSGGQICGNMTSGGTESILLAVKTSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRVPVDKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLRNTKAIMEGSRRIQKGIEEIAELFIVGKPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00261 539 PANTHER - 36 539 - -
Viun5g00261 539 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 444 IPR002129 GO:0016830|GO:0019752|GO:0030170
Viun5g00261 539 Gene3D - 136 403 IPR015421 GO:0003824
Viun5g00261 539 Gene3D Aspartate Aminotransferase, domain 1 108 502 IPR015422 GO:0003824
Viun5g00261 539 SUPERFAMILY PLP-dependent transferases 81 503 IPR015424 -
Viun5g00261 539 Gene3D - 99 536 - -
Viun5g00261 539 FunFam Sphingosine-1-phosphate lyase 1 390 502 - -
Viun5g00261 539 FunFam Sphingosine-1-phosphate lyase 1 500 538 - -
Viun5g00261 539 FunFam sphingosine-1-phosphate lyase 1 139 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00261 155 499 Calmodulin-binding Proteins AT3G17760 27.049 4.67e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00261 K01634 - gmx:100794395 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00261 5 1498019 1504513 Viun5g00261 5 1498019 1504513 ECH