Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00241 ATGGCGTCTTCACTCCCTCGGAGAAGAACCCACGCTCCCAAATCATCTCCCGCCGTAGCCGTAATCGACGACATTTTATGCCAGGAATGCGGCTCCGGCGACTCTCCGGCGAGGTTGCTTCTCTGCGACAACTGCGATCGAGGCTACCACCTCTTCTGCCTCCGTCCCATCCTCCCTTCCGTCCCCACAGGCTCCTGGTTCTGTGGCTCCTGCTCCAACCACAAGCCTAAGTCTTTCCCCCTTGTTCAGACCAAAATAATTGATTTCTTTCGCATTCAACGTTCCTCCGAGCCATTGTTGAATCAAGATGCACGGAAGAAGCGAAAGCGGGGTGGGAGCTTGGTGATTTCGAAGAAGAAACGGAAACTGTTGCCGTTCGTGCCGAGTGAGGATCCAAATAGGAAGTTGGAGCAGATGGCATCACTGGCAACGGCATTGACCGCTACTAATACAGAGTTCAGCAATAAGCTTACTTACATGCCTGGAATGGCACCTAGGTCTGCTAATTGTCCTGCTCTCGAGCGTGGTGGAATGCAGGTTTTGTCAAAAGAAGATACTGAGACATTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTAATGGTTGTTTTTGATCCTCTAGAAGGCTTCACAGTCGAAGCAGATAGACCCATCAAAGATTTAACCATAATTACAGAATATGTTGGGGATGTAGATTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCGAAGACACTTGTGATCTGTCCTGACAAACGTAGCAATATAGCCCGGTTCATCAATGGCATCAATAACCATACACAGGAAGGAAAAAAGAAACAAAACTTAAAATGCGTGAGATTTGATGTTGGAGGCGAATGTCGAGTTCTTTTAGTCTCCAATAGAGATATCTCAAAGGGGGAAAGGTTGTACTATGACTACAATGGAGATGAACATGAGTATCCAACTGAAAATTTTGTCTGA 1011 0.459 MASSLPRRRTHAPKSSPAVAVIDDILCQECGSGDSPARLLLCDNCDRGYHLFCLRPILPSVPTGSWFCGSCSNHKPKSFPLVQTKIIDFFRIQRSSEPLLNQDARKKRKRGGSLVISKKKRKLLPFVPSEDPNRKLEQMASLATALTATNTEFSNKLTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTQEGKKKQNLKCVRFDVGGECRVLLVSNRDISKGERLYYDYNGDEHEYPTENFV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00241 336 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Viun5g00241 336 FunFam Histone-lysine N-methyltransferase ATXR5 107 336 - -
Viun5g00241 336 Pfam PHD-finger 27 73 IPR019787 -
Viun5g00241 336 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 97 334 - -
Viun5g00241 336 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Viun5g00241 336 ProSiteProfiles SET domain profile. 202 324 IPR001214 GO:0005515
Viun5g00241 336 CDD PHD_RSF1 26 71 - -
Viun5g00241 336 SUPERFAMILY SET domain 194 327 IPR046341 -
Viun5g00241 336 SMART PHD_3 26 72 IPR001965 -
Viun5g00241 336 Gene3D SET domain 108 336 IPR046341 -
Viun5g00241 336 SUPERFAMILY FYVE/PHD zinc finger 14 78 IPR011011 -
Viun5g00241 336 CDD SET_ATXR5_6-like 199 336 - -
Viun5g00241 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00241 Viun-Chr5 1406284 1408558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00241 24 87 C2H2 Transcription Factor Family AT3G01460 32.836 1.87e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun5g00241 PHD 8.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00241 K24406 - gmx:100775247 598.971