Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00240 ATGGCGTCTTCACTCCCTCGGAGAAGAACCCACGCTCCCAAATCATCTCCCGCCGTAGCCGTAATCGACGACATTTTATGCCAGGAATGCGGCTCCGGCGACTCTCCGGCGAGGTTGCTTCTCTGCGACAACTGCGATCGAGGCTACCACCTCTTCTGCCTCCGTCCCATCCTCCCTTCCGTCCCCACAGGCTCCTGGTTCTGTGGCTCCTGCTCCAACCACAAGCCTAAGTCTTTCCCCCTTGTTCAGACCAAAATAATTGATTTCTTTCGCATTCAACGTTCCTCCGAGCCATTGTTGAATCAAGATGCACGGAAGAAGCGAAAGCGGGGTGGGAGCTTGGTGATTTCGAAGAAGAAACGGAAACTGTTGCCGTTCGTGCCGAGTGAGGATCCAAATAGGAAGTTGGAGCAGATGGCATCACTGGCAACGGCATTGACCGCTACTAATACAGAGTTCAGCAATAAGCTTACTTACATGCCTGGAATGGCACCTAGGTCTGCTAATTGTCCTGCTCTCGAGCGTGGTGGAATGCAGGTTTTGTCAAAAGAAGATACTGAGACATTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTAATGGTTGTTTTTGATCCTCTAGAAGGCTTCACAGTCGAAGCAGATAGACCCATCAAAGATTTAACCATAATTACAGAATATGTTGGGGATGTAGATTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCGAAGACACTTGTGATCTGTCCTGACAAACGTAGCAATATAGCCCGGTTCATCAATGGCATCAATAACCATACACATATGGATGGTCGGGATTATGAAACAGCAAACAGTGCAACACACCTTGGTGCTCATGCATTGCGCTCGCACATGAATAATGAGTTCTGA 939 0.4739 MASSLPRRRTHAPKSSPAVAVIDDILCQECGSGDSPARLLLCDNCDRGYHLFCLRPILPSVPTGSWFCGSCSNHKPKSFPLVQTKIIDFFRIQRSSEPLLNQDARKKRKRGGSLVISKKKRKLLPFVPSEDPNRKLEQMASLATALTATNTEFSNKLTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTHMDGRDYETANSATHLGAHALRSHMNNEF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00240 312 SUPERFAMILY SET domain 194 277 IPR046341 -
Viun5g00240 312 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Viun5g00240 312 SMART PHD_3 26 72 IPR001965 -
Viun5g00240 312 Coils Coil 305 312 - -
Viun5g00240 312 PANTHER HISTONE ACETYLTRANSFERASE 24 288 - -
Viun5g00240 312 Pfam PHD-finger 27 73 IPR019787 -
Viun5g00240 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 77 IPR013083 -
Viun5g00240 312 Gene3D SET domain 108 294 IPR046341 -
Viun5g00240 312 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Viun5g00240 312 CDD PHD_RSF1 26 71 - -
Viun5g00240 312 SUPERFAMILY FYVE/PHD zinc finger 14 78 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00240 Viun-Chr5 1405535 1408571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00240 24 87 C2H2 Transcription Factor Family AT3G01460 32.836 1.31e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun5g00240 PHD 7.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00240 K24406 - gmx:100775247 494.582