Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00224 ATGGCCACCAAAGAAAATAATGAATTGGTAATAGGGATCGACCTTGGCACGACGTATTCCTGTGTTGCAGTATGGCGGCACGAACATAATAGAGTGGACATTATCCCTAATGATCAAGGCAACAACACCACCCCTTCGTGTGTTGCTTTTACGAATTATGAAAGGTTGATAGGAGATGCTGCTGCAGATCAAGCTCCCATCAATCCAGAGAACACCATCTTCGATGTTAAGAGGTTGATGGGTAGGAAATACACTGACTCATTGGTTCAGGAAGACAAAATGATGTGGCCATTTAAGGTGGTTGCTGGTGTGGATGACAAACCAATGGTTGTTGTCAAATATAAGGGTGAGGAAAAGAAGTTTTATGCAGAGGAAATATCATCGATGATACTGTCAAAGATGCAGACCATTGCTGAGGCATACATGGGAAAGCCTGTGAAGAATGCGGTGGTTACGGTACCTGCATATTTCAACGACTCTCAGCGCAAAGCTACTATTGATGCTGGTGTTATTATCGGTCTGAATATTGTTCGGATAATCAATGAACCAACTGCTGCAGCCATCGCATATGCTCTTGACAAGAGAAATGATTGTATTGGAGAAAGAAATATTTTGGTATTTGACTTTGGAGGAGGTACATTCGATGTATCTCTCCTGACCATTGAGGGTAAAGTCTTTCGAGTTAAGGGGACTGCAGGAAATTCTCACTTGGGTGGGGAAGACATCAATAATAGGATGATGAAATACTTTGTGGAGGAATTGAGAACAAAAAATAGAGTCGAAATAAGTGGAAATTCACGAGCCCTGAGGAGGTTAAAGAGTGCTTGCGAGAGAGCAAAGAGGCATCTCTCATATGCCATTAAAACAGACATTGAGGTAGATGGTTTAGTTAGAGGATTTGATTGGCATGCTTCAATCACTCGAGCCAAATTTGAAAAAATTAATATCGATCTCTTTGAAGAGTGTGTGAAGACAGTAGAGGAGTGTCTTAGGGATGCTAAAATGAATAAAAGCCGTGTGCATGATGTTGTTCTGGTGGGTGGTTCTTCCAGGATTCCGAAAGTGCAGCAGCTGCTGCAAGACTTTTTCAATGGGAAGAATCTTTGCAAGAGTATAAATGCTGATGAAGCTGTCGCTTATGGTGCAGCTATACAAGCTGCAATGTTAAGTGAAGGTATTAGCAATGTTCCACCATTGGTATTAAAAGATGTTACTCCGTTTTCCCTTGGCGTATCAACAAAGGGAGATATCATGAGTGTACTCATCCCGAGGAACAATACTATTCCTGTAACGAAGAAACGGAGTTATTGGACATGCACAGATGGCCAATTGTCAATCAAGATTAAGGTTTATGAGGGCGAGAGAGCAAAGGCAAGTGGTAATAATTTGTTGGGATCTTTTTCTATTTCTATTTTTCCTCCAGCTCTCCGAGGCCATCCTTTTGATATAACTTTTGCCTTAAATGAAAATGGCATTTTATCTGTTTCTGCTGAGGATAAAGCAACCGGCAATGAGAAAAAAATTACGATAACCAATGATAAAGGAAGGCTTTCATCTGCAGAAATTGATAGAATGATTCAAGAAGCACGACAGTACAAGTCTGAAGATGAAAAGTTTATTAGGAAGGCGAATGCATTAAATGATTTAGATCGTCGTGTTTACAGGATCAGAAGTGCTTTGAACGAAGAGAAAATCAACTCGAAGTTGAGCTCAAAAGAAAAGCAAGATATCAATCTTACAATTTGTAGAGCCACCGAAATGCTTGATTGTCTGAACCAGCAAGATATAGGTGCTATTGGAGAATGTCTGAAAGAACTTAAAACAATCTTGGATCGAATTATGGCCTTGTAG 1851 0.403 MATKENNELVIGIDLGTTYSCVAVWRHEHNRVDIIPNDQGNNTTPSCVAFTNYERLIGDAAADQAPINPENTIFDVKRLMGRKYTDSLVQEDKMMWPFKVVAGVDDKPMVVVKYKGEEKKFYAEEISSMILSKMQTIAEAYMGKPVKNAVVTVPAYFNDSQRKATIDAGVIIGLNIVRIINEPTAAAIAYALDKRNDCIGERNILVFDFGGGTFDVSLLTIEGKVFRVKGTAGNSHLGGEDINNRMMKYFVEELRTKNRVEISGNSRALRRLKSACERAKRHLSYAIKTDIEVDGLVRGFDWHASITRAKFEKINIDLFEECVKTVEECLRDAKMNKSRVHDVVLVGGSSRIPKVQQLLQDFFNGKNLCKSINADEAVAYGAAIQAAMLSEGISNVPPLVLKDVTPFSLGVSTKGDIMSVLIPRNNTIPVTKKRSYWTCTDGQLSIKIKVYEGERAKASGNNLLGSFSISIFPPALRGHPFDITFALNENGILSVSAEDKATGNEKKITITNDKGRLSSAEIDRMIQEARQYKSEDEKFIRKANALNDLDRRVYRIRSALNEEKINSKLSSKEKQDINLTICRATEMLDCLNQQDIGAIGECLKELKTILDRIMAL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00224 616 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 545 614 IPR029048 -
Viun5g00224 616 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 546 IPR029047 -
Viun5g00224 616 Gene3D - 74 129 - -
Viun5g00224 616 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Viun5g00224 616 FunFam Heat shock cognate 70 kDa protein 2 322 369 - -
Viun5g00224 616 PANTHER HEAT SHOCK PROTEIN 70KDA 10 568 IPR013126 GO:0005524|GO:0140662
Viun5g00224 616 FunFam Heat shock protein 70 11 201 - -
Viun5g00224 616 Pfam Hsp70 protein 10 611 IPR013126 GO:0005524|GO:0140662
Viun5g00224 616 Gene3D - 547 616 IPR029048 -
Viun5g00224 616 Gene3D - 11 387 - -
Viun5g00224 616 FunFam heat shock 70 kDa protein-like 74 129 - -
Viun5g00224 616 SUPERFAMILY Actin-like ATPase domain 9 194 IPR043129 -
Viun5g00224 616 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Viun5g00224 616 Gene3D Actin; Chain A, domain 4 238 321 - -
Viun5g00224 616 SUPERFAMILY Actin-like ATPase domain 201 390 IPR043129 -
Viun5g00224 616 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Viun5g00224 616 Gene3D - 195 369 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 340 356 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 398 417 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 372 392 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 61 69 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 9 22 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 478 494 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 39 51 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 149 169 - -
Viun5g00224 616 PRINTS 70kDa heat shock protein signature 212 222 - -
Viun5g00224 616 FunFam Heat shock 70 kDa 238 321 - -
Viun5g00224 616 FunFam Heat shock 70 kDa protein 393 546 - -
Viun5g00224 616 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 550 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00224 Viun-Chr5 1327976 1331394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00224 11 615 Calmodulin-binding Proteins AT3G12580 61.944 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00224 K03283 - gmx:102667572 837.025