Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00217 ATGGTGGGGAACGACGACGCGGGTCATATTTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCGTCCCGTACCGCCGCCGGGAACGCCTCTTCCGGCGAGGCGGGTAAGGGTTTCGCGGATTCTGGCAGCGCGGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTTACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCCTGCCGCCGCTGCAGCCGCTCTCTATCGCGCGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGGTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCGGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAAGGATAGGGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAGCAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCCACATCTCTGGTCATTGCTTACCTTATGTGGAGGGAAGGCCAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCAGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTCAGGATTTACAGGATTGCTCCACACTCCCCTTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCTTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGATGCCAGAGGGGCCGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGGCCAATTGTGATGATTAAGGAAGGTGAGGAACCGGCTTATTTCTGGAATGCTTTTTCGAATTTTCTGCCCTTGATGGATAAATCTGGCAATAGAGTAGAAGATGGAAACTTGACTGGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCCTATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACTGGAGGATTTGTGCCTCCCTTTGCTTCATCGGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCTACCCCTAGGTTATCCTTTCCCAGGGTTTATTCAGATTCCATGTTGTGTATTCACACATCAGCCAACTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCTAAGTTTTTGTCAGAAGTGTCCCCAGATTCTTCCTCTGTGGTTTTGACTCCTATTCCCGTATTTTCTTCTTTGTCTAGTTTTTCTAATTTGTCAATCTCTTCAAGTTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCATTGGTGTCAATCTACCTCATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCACTGAAGAGTGATAAGAAACAAGTAATGGATAAGCCACCGACCTTTCATAATAGTCAAGAATTTGACATTGTTGTTAATGGCAATGTTAGCTATTTGCAACCATCAGATAGTAAAGATTATTTTTGTGAGCCTAACAACCATGCCAAGGATGGAGGTGTGAATTCCTTTCAAAAGTGTGAGCTGGCATTATGTCCAAGCATTGTTGACAGCACGCACCTCAAGGAATCATCACTTGTTCGGAACTCTGTTGAGCCTTTGGTACATACTTCCTCAGTAGAAGACGCAGTGCTTGGTCAGTCTGCAGCATTGAAGGAAACTAATGAGAGTGGCTCACTGCAGTTTAATGTTGCACAGCCTTCGGTATATCACTGGCCCAGTTTAGAAAAGGTTGAGACATTTGGTGCAGATCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCACGTACACGCAGGGAACATGTTATATATTTGGTTAGGGAGGTCTTTCAATTGTGATACTTCACAGGTTCACTTGGATGTTGATATACAGTTAGATTGTTTAGGAGCTGTGGACTGGAATCAAATTGGTTGTGATCTCCTAGATCGGTTTAGTTTGCCAAAGAGTACAGTCATCAAGATTGTTAAAGAGAATGAGGAACCTTCAGAGTTCCTTGCTTTGCTCAGTTCATTGTAG 2577 0.4598 MVGNDDAGHISASRKMFWRSASWSSSRTAAGNASSGEAGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVAKDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWNAFSNFLPLMDKSGNRVEDGNLTGKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSSSVVLTPIPVFSSLSSFSNLSISSSSTSKAVSNSTDIIGVNLPHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKSDKKQVMDKPPTFHNSQEFDIVVNGNVSYLQPSDSKDYFCEPNNHAKDGGVNSFQKCELALCPSIVDSTHLKESSLVRNSVEPLVHTSSVEDAVLGQSAALKETNESGSLQFNVAQPSVYHWPSLEKVETFGADHLDSKAAFVIFSPSMHVHAGNMLYIWLGRSFNCDTSQVHLDVDIQLDCLGAVDWNQIGCDLLDRFSLPKSTVIKIVKENEEPSEFLALLSSL 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00217 858 Gene3D Severin 320 404 IPR029006 -
Viun5g00217 858 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Viun5g00217 858 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
Viun5g00217 858 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Viun5g00217 858 SUPERFAMILY Actin depolymerizing proteins 306 411 - -
Viun5g00217 858 SUPERFAMILY Actin depolymerizing proteins 760 856 - -
Viun5g00217 858 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Viun5g00217 858 MobiDBLite consensus disorder prediction 94 122 - -
Viun5g00217 858 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Viun5g00217 858 Gene3D Protein tyrosine phosphatase superfamily 133 299 IPR029021 -
Viun5g00217 858 MobiDBLite consensus disorder prediction 510 537 - -
Viun5g00217 858 PANTHER MKPA PROTEIN 13 855 - -
Viun5g00217 858 CDD DSP 158 292 - -
Viun5g00217 858 MobiDBLite consensus disorder prediction 20 78 - -
Viun5g00217 858 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00217 Viun-Chr5 1273746 1278257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00217 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 63.021 2.77e-66 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00217 - - vum:124838930 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00217 5 1273746 1278257 Viun5g00217 5 1273746 1278257 ECH