Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00214 ATGAGTTTTTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGTTGCTTATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCCACATTCTTCAGTGGTCTTGTCATTGGCATTATCAATTGTTGGCAGATTGCTTTGTTAACATTAGGAACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTAGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTGGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCTAAGTATTCATATGCAACATCATTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGTCTTGGTCTTGGATTTACATATGGTCTAGCAATATGTTCTTGTGCGTTACAACTCTGGGTTGGAAGATTCTTGATTATTCATGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTTATTCTAAGTGGCCTGGGATTGAATCAAGCAGCTACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGATTGTTTGAGATGATAAGTCGATCACCCTCATCTGTTAATCATGATGGCACTGCCCCGGATTCAGTGCAAGGAAATATTGAATTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACCGTGCCTGCTAAGAAAGCCGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCCACATTAGGAGAAGTTCTTTTAGATGGTGAGAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGCCAAATAGGATTAGTCACCCAGGAGCCTGCTTTACTCAGTTTGAGTATAAGAGACAATATTGCTTATGGTAGGGATGCTTCCATGGATCAAATTGAAGAGGCAGCTAAAATAGCTCAAGCACATACGTTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTGGCTCTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGACGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCTACACTAATAATTGCTCGCAGGCTTAGTCTCATAAGGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGAATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCAACCAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCGGGCTTCCAAATTGAAAAGGATTCTTCAAGTCATAGCTTAAAAGAATCATCATCTCCTAAAATGACTAAGTCACCCTCTCTTCAAAGAATGTCTAATGTATCCCGACCTTCAGATGGCACCTATAACTTGCAAGAATCACCAAAAGTCTGGAGCCCACCACCTGAGCACATGGTGGAAAATGGACAGCTATTGGATGCAGCAGACAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTTCCCGAGCTACCAAAGATTGATGTTCAGACTCTGCAGAGACAAAAGTCAAATGAATCTGATCCTGAATCTCCAGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAGACTTTTAGTAGACTACATAGTCATTCTGATGATGTTTCAGTTAAATTGAGAGAAACAAAGGGTGTGCGACACCAAAAGCCCCCACCACTGCGGAAACTGGCTGAGCTTAGTTTTGCTGAATGGCTTTATGCTGTGTTAGGAAGCATAGGAGCTGCAATCTTTGGCTCTTTCAACCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACCCGTCACCTGGAACGGGAAGTAGACAAGTGGTGCTTGATCATTGCTTGCATGGGTATTGTGACGGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGTGAGAAAATGACGGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTTCGCAATGAAGTGGGATGGTTTGATGGTGAGGAGAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTTATTGGGGCTTTGCTGCACTGGCGATTAGCACTAGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGAGGTATCCAGGAAATGCACAGAAAGGCATCTTTGGTCCTTGAAGATGCGGTTAGGAACATTTACACTGTGGTTGCTTTCTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTACATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAATTTCTACTTTTTGCCTGTAATGCCCTGCTACTTTGGTACACTGCCATATGTATAAAGCGAGGTTACATGGATCCACCCACTGCACTCAAAGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCGTACATACTAAAACGACGAAAATCCCTCATATCGGTGTTTGAAATTATAGACCGTGTTCCTAAAATTGATCCTGATGATGGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTCTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAACGGGGGCCAAACGGTTGCAGTTGTGGGAGTTTCAGGATCAGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCAGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTATATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTTTCAACAACCATAAGGGAAAACATTCTATATGCAAGGCATAATGCCACTGAAGCGGAGATGAAAGAGGCTGCAAGAATAGCAAATGCCCATCATTTCATTAGCAGCTTGCCTCACGGTTATGACACTCATATAGGGATGAGAGGCGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCCAGTTCATCAATTGAATCCGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACTACCATTTTAATAGCACACAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGCGGACGGATAGTGGAGGAAGGCAGTCATGATTCATTGGTTGCAAAGAACGGTTTGTATGTCCGCTTGATGCAACCTCATTTTGGTAAGACCTTGCGTCAGCATCGACTTGTTTAG 3684 0.418 MSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGIINCWQIALLTLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDASMDQIEEAAKIAQAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTLIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLNGLYAELLRCEEATKLPKRMPVRNYKETAGFQIEKDSSSHSLKESSSPKMTKSPSLQRMSNVSRPSDGTYNLQESPKVWSPPPEHMVENGQLLDAADKEPSIRRQDSFEMRLPELPKIDVQTLQRQKSNESDPESPVSPLLTSDPKSERSHSQTFSRLHSHSDDVSVKLRETKGVRHQKPPPLRKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTRHLEREVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDGEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDGSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENILYARHNATEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKTLRQHRLV 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00214 1227 Gene3D - 976 1215 IPR027417 -
Viun5g00214 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 655 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00214 1227 SMART AAA_5 1005 1192 IPR003593 GO:0016887
Viun5g00214 1227 SMART AAA_5 259 571 IPR003593 GO:0016887
Viun5g00214 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1214 IPR027417 -
Viun5g00214 1227 PANTHER ABC TRANSPORTER B FAMILY 2 665 IPR039421 -
Viun5g00214 1227 SUPERFAMILY ABC transporter transmembrane region 637 963 IPR036640 GO:0005524|GO:0016020
Viun5g00214 1227 CDD ABC_6TM_Pgp_ABCB1_D2_like 650 961 - -
Viun5g00214 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 232 467 IPR003439 GO:0005524
Viun5g00214 1227 FunFam ABC transporter B family member 20 968 1217 - -
Viun5g00214 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00214 1227 MobiDBLite consensus disorder prediction 486 544 - -
Viun5g00214 1227 FunFam ABC transporter B family member 20 222 469 - -
Viun5g00214 1227 SUPERFAMILY ABC transporter transmembrane region 1 213 IPR036640 GO:0005524|GO:0016020
Viun5g00214 1227 MobiDBLite consensus disorder prediction 500 533 - -
Viun5g00214 1227 FunFam ABC transporter B family member 6 825 975 - -
Viun5g00214 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 978 1215 IPR003439 GO:0005524
Viun5g00214 1227 MobiDBLite consensus disorder prediction 565 621 - -
Viun5g00214 1227 MobiDBLite consensus disorder prediction 607 621 - -
Viun5g00214 1227 Gene3D ABC transporter type 1, transmembrane domain 1 484 IPR036640 GO:0005524|GO:0016020
Viun5g00214 1227 MobiDBLite consensus disorder prediction 578 606 - -
Viun5g00214 1227 FunFam ABC transporter B family member 6 595 823 - -
Viun5g00214 1227 Pfam ABC transporter 996 1144 IPR003439 GO:0005524
Viun5g00214 1227 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 207 - -
Viun5g00214 1227 Pfam ABC transporter 253 397 IPR003439 GO:0005524
Viun5g00214 1227 Gene3D - 222 469 IPR027417 -
Viun5g00214 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 466 IPR027417 -
Viun5g00214 1227 Gene3D ABC transporter type 1, transmembrane domain 825 975 IPR036640 GO:0005524|GO:0016020
Viun5g00214 1227 Gene3D ABC transporter type 1, transmembrane domain 594 824 IPR036640 GO:0005524|GO:0016020
Viun5g00214 1227 Pfam ABC transporter transmembrane region 660 924 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00214 1227 Pfam ABC transporter transmembrane region 1 182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00214 Viun-Chr5 1250493 1259789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00214 1 524 Calmodulin-binding Proteins AT2G36910 46.139 3.54e-138 451