Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00213 ATGATGATATCAAGGGGATTGTTCGGTTGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTTTCGGAGGTCTCGGAGCCGCCGGAGTCGCCGTCGCCGTACCTGGACCCCGGCGCCGAGACTTCTGCCTCGCAGCAGGTGGAGGTGGAGGAGGAAATGGAGGAGCCGGAGGAGATCGAACCGCCGCCCGGGGCGGTTCCTTTTTCGCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGACCGTCGGCTCCCTTGCCGCTGCGGCTCATGGCACCGCGCTCGTCGTTTACTTGCACTATTTCGCGAAGATCATCCACGTGCTGCGGATGGATTCTGAGCTCGGCACGTCACACGAGCAGTTTAACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGCGGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCGTGTTGGATCTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAATTATGTTCAAGTACTGCTTAATCAAGATATGAGTTTTTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGTTGCTTATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCCACATTCTTCAGTGGTCTTGTCATTGGCATTATCAATTGTTGGCAGATTGCTTTGTTAACATTAGGAACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTAGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTGGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCTAAGTATTCATATGCAACATCATTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGTCTTGGTCTTGGATTTACATATGGTCTAGCAATATGTTCTTGTGCGTTACAACTCTGGGTTGGAAGATTCTTGATTATTCATGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTTATTCTAAGTGGCCTGGGATTGAATCAAGCAGCTACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGATTGTTTGAGATGATAAGTCGATCACCCTCATCTGTTAATCATGATGGCACTGCCCCGGATTCAGTGCAAGGAAATATTGAATTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACCGTGCCTGCTAAGAAAGCCGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCCACATTAGGAGAAGTTCTTTTAGATGGTGAGAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGCCAAATAGGATTAGTCACCCAGGAGCCTGCTTTACTCAGTTTGAGTATAAGAGACAATATTGCTTATGGTAGGGATGCTTCCATGGATCAAATTGAAGAGGCAGCTAAAATAGCTCAAGCACATACGTTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTGGCTCTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGACGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCTACACTAATAATTGCTCGCAGGCTTAGTCTCATAAGGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGAATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCAACCAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCGGGCTTCCAAATTGAAAAGGATTCTTCAAGTCATAGCTTAAAAGAATCATCATCTCCTAAAATGACTAAGTCACCCTCTCTTCAAAGAATGTCTAATGTATCCCGACCTTCAGATGGCACCTATAACTTGCAAGAATCACCAAAAGTCTGGAGCCCACCACCTGAGCACATGGTGGAAAATGGACAGCTATTGGATGCAGCAGACAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTTCCCGAGCTACCAAAGATTGATGTTCAGACTCTGCAGAGACAAAAGTCAAATGAATCTGATCCTGAATCTCCAGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAGACTTTTAGTAGACTACATAGTCATTCTGATGATGTTTCAGTTAAATTGAGAGAAACAAAGGGTGTGCGACACCAAAAGCCCCCACCACTGCGGAAACTGGCTGAGCTTAGTTTTGCTGAATGGCTTTATGCTGTGTTAGGAAGCATAGGAGCTGCAATCTTTGGCTCTTTCAACCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACCCGTCACCTGGAACGGGAAGTAGACAAGTGGTGCTTGATCATTGCTTGCATGGGTATTGTGACGGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGTGAGAAAATGACGGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTTCGCAATGAAGTGGGATGGTTTGATGGTGAGGAGAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTTATTGGGGCTTTGCTGCACTGGCGATTAGCACTAGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGAGGTATCCAGGAAATGCACAGAAAGGCATCTTTGGTCCTTGAAGATGCGGTTAGGAACATTTACACTGTGGTTGCTTTCTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTACATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAATTTCTACTTTTTGCCTGTAATGCCCTGCTACTTTGGTACACTGCCATATGTATAAAGCGAGGTTACATGGATCCACCCACTGCACTCAAAGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCGTACATACTAAAACGACGAAAATCCCTCATATCGGTGTTTGAAATTATAGACCGTGTTCCTAAAATTGATCCTGATGATGGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTCTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAACGGGGGCCAAACGGTTGCAGTTGTGGGAGTTTCAGGATCAGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCAGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTATATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTTTCAACAACCATAAGGGAAAACATTCTATATGCAAGGCATAATGCCACTGAAGCGGAGATGAAAGAGGCTGCAAGAATAGCAAATGCCCATCATTTCATTAGCAGCTTGCCTCACGGTTATGACACTCATATAGGGATGAGAGGCGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCCAGTTCATCAATTGAATCCGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACTACCATTTTAATAGCACACAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGCGGACGGATAGTGGAGGAAGGCAGTCATGATTCATTGGTTGCAAAGAACGGTTTGTATGTCCGCTTGATGCAACCTCATTTTGGTAAGACCTTGCGTCAGCATCGACTTGTTTAG 4209 0.4374 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEVEEEMEEPEEIEPPPGAVPFSQLFACADRFDWFLMTVGSLAAAAHGTALVVYLHYFAKIIHVLRMDSELGTSHEQFNRFTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGIINCWQIALLTLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDASMDQIEEAAKIAQAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTLIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLNGLYAELLRCEEATKLPKRMPVRNYKETAGFQIEKDSSSHSLKESSSPKMTKSPSLQRMSNVSRPSDGTYNLQESPKVWSPPPEHMVENGQLLDAADKEPSIRRQDSFEMRLPELPKIDVQTLQRQKSNESDPESPVSPLLTSDPKSERSHSQTFSRLHSHSDDVSVKLRETKGVRHQKPPPLRKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTRHLEREVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDGEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDGSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENILYARHNATEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKTLRQHRLV 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00213 1402 FunFam ABC transporter B family member 6 770 998 - -
Viun5g00213 1402 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Viun5g00213 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1153 1390 IPR003439 GO:0005524
Viun5g00213 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00213 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Viun5g00213 1402 FunFam ABC transporter B family member 20 397 644 - -
Viun5g00213 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Viun5g00213 1402 PANTHER ABC TRANSPORTER B FAMILY 48 840 IPR039421 -
Viun5g00213 1402 Pfam ABC transporter transmembrane region 85 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00213 1402 Pfam ABC transporter transmembrane region 835 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00213 1402 MobiDBLite consensus disorder prediction 13 62 - -
Viun5g00213 1402 FunFam ABC transporter B family member 6 1000 1150 - -
Viun5g00213 1402 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1136 - -
Viun5g00213 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g00213 1402 FunFam ABC transporter B family member 20 70 409 - -
Viun5g00213 1402 Gene3D - 397 644 IPR027417 -
Viun5g00213 1402 MobiDBLite consensus disorder prediction 753 781 - -
Viun5g00213 1402 Gene3D ABC transporter type 1, transmembrane domain 1000 1150 IPR036640 GO:0005524|GO:0016020
Viun5g00213 1402 Gene3D ABC transporter type 1, transmembrane domain 769 999 IPR036640 GO:0005524|GO:0016020
Viun5g00213 1402 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Viun5g00213 1402 MobiDBLite consensus disorder prediction 782 796 - -
Viun5g00213 1402 Pfam ABC transporter 1171 1319 IPR003439 GO:0005524
Viun5g00213 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1389 IPR027417 -
Viun5g00213 1402 Gene3D - 1151 1390 IPR027417 -
Viun5g00213 1402 Gene3D ABC transporter type 1, transmembrane domain 70 659 IPR036640 GO:0005524|GO:0016020
Viun5g00213 1402 MobiDBLite consensus disorder prediction 740 796 - -
Viun5g00213 1402 SUPERFAMILY ABC transporter transmembrane region 812 1138 IPR036640 GO:0005524|GO:0016020
Viun5g00213 1402 FunFam ABC transporter B family member 20 1143 1392 - -
Viun5g00213 1402 MobiDBLite consensus disorder prediction 675 708 - -
Viun5g00213 1402 MobiDBLite consensus disorder prediction 661 719 - -
Viun5g00213 1402 SMART AAA_5 1180 1367 IPR003593 GO:0016887
Viun5g00213 1402 SMART AAA_5 434 746 IPR003593 GO:0016887
Viun5g00213 1402 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00213 Viun-Chr5 1250493 1260462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00213 53 699 Calmodulin-binding Proteins AT2G36910 43.884 4.74e-167 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00213 K05658 - gmx:100779000 2532.29