Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00211 ATGATCATTTTCGTTTTTGTTGGGGAAGGATCTGGCATGGCTTACAGCAAGCTTACCAACAATGGACCTGCAACACCTACTGGTCTAATAGTTGCATCACTGTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACCATTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTTATAGGAGGAAACATAACCCTGCTGAGAAGTATTCTGTATTGGATTGCACAGTTACTTGGTTCAGTTATTGCATGCATTCTTCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGGCTTTTCTCTGTCCCCTGGTGTGTCTGTGTGGAATGCATTGATTTTTGAAGTTGTGATGACTTTTGGTTTGGTATACACAGTTTATGCAACAGCAGTGGATCCAAAGAAAGGGAATGTGGGAATTGTTGCTCCTATTGCAATTGGTTTGATTGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACATGGCAATGGACTCATCACTGGGTCTATTGGGCTGGACCATTCATTGGTGCAGCCATTGCTGCAATTATCTATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTTTCAAGCAGTGACTTCTAG 672 0.4405 MIIFVFVGEGSGMAYSKLTNNGPATPTGLIVASLSHAFGLFVAVSVGANHSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVIACILLKSATGGMETSGFSLSPGVSVWNALIFEVVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVTWQWTHHWVYWAGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00211 223 PANTHER AQUAPORIN-8 1 217 IPR034294 -
Viun5g00211 223 Pfam Major intrinsic protein 2 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 FunFam Probable aquaporin TIP1-1 1 222 - -
Viun5g00211 223 CDD MIP 3 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 SUPERFAMILY Aquaporin-like 2 211 IPR023271 -
Viun5g00211 223 Gene3D Glycerol uptake facilitator protein. 1 223 IPR023271 -
Viun5g00211 223 ProSitePatterns MIP family signature. 54 62 IPR022357 -
Viun5g00211 223 PRINTS Major intrinsic protein family signature 118 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 PRINTS Major intrinsic protein family signature 36 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 PRINTS Major intrinsic protein family signature 151 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00211 223 PRINTS Major intrinsic protein family signature 188 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00211 Viun-Chr5 1247559 1249573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00211 1 223 Major Intrinsic Protein MIP AT4G01470 82.511 1.24e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00211 K09873 - gmx:100788583 414.846