Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00207 ATGAAGAGAGAAAGAGAGGTCGATAGTTTAACCATGGCGAATTGTTTGATGTTGCTTTCTCGTGGAGGTGAATTTGAGGCCACATATTCAAGCTCTTCTTCCATGAGCAACCGTGTGTTTGAGTGCAAAACATGCAACAGGCAATTTCCCTCATTTCAAGCACTTGGTGGGCACAGAGCTAGTCACAAGAAACCTAGGTTGATGCCAGGAGATAACAGTGATCAAGCGCTTCACGATTCACCCCCAAAACCTAAGACTCATGAGTGTTCCGTTTGTGGATTGGAGTTTGCTATAGGCCAGGCTTTGGGAGGTCACATGAGGAGACACAGAGCTGCGAATTTGAACGGAAACCTCCATAATTCCACCACTATCAGCAGTAGCAGTGGTGGTGGTAGCAGCAGCATCGATTCTTCGACCAAGAACAACGTTGTTGCCAACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAACGATTTGGAGATTTTGAAGATAGGAAAACCAACTTCTTTGGTTGATTATTTGTATTAG 540 0.4407 MKREREVDSLTMANCLMLLSRGGEFEATYSSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMPGDNSDQALHDSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAANLNGNLHNSTTISSSSGGGSSSIDSSTKNNVVANKRVLVLDLNLTPFENDLEILKIGKPTSLVDYLY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00207 179 MobiDBLite consensus disorder prediction 120 139 - -
Viun5g00207 179 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Viun5g00207 179 PANTHER ZINC FINGER PROTEIN ZAT5 5 161 - -
Viun5g00207 179 Pfam C2H2-type zinc finger 87 111 - -
Viun5g00207 179 Pfam C2H2-type zinc finger 39 65 - -
Viun5g00207 179 MobiDBLite consensus disorder prediction 56 84 - -
Viun5g00207 179 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Viun5g00207 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Viun5g00207 179 Gene3D Classic Zinc Finger 37 109 - -
Viun5g00207 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Viun5g00207 179 SMART c2h2final6 40 62 IPR013087 -
Viun5g00207 179 SMART c2h2final6 87 109 IPR013087 -
Viun5g00207 179 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00207 Viun-Chr5 1220121 1220889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00207 12 170 C2H2 Transcription Factor Family AT2G28710 43.787 1.79e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g00207 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00207 - - gmx:100781134 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00207 5 1220121 1220889 Viun5g00207 5 1220121 1220889 ECH