Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00201 ATGGTGAACGTGATGGATTGGCAGAAGCAGCGTTGGCAACCCAACGGGAACGCCGAAATGATGTACGTCAAAGTCATGACCGACGAACAACTCGAGACTCTCCGCAAGCAGATTGCGGTTTACGCAACAATCTGCGAGCAACTCATCGAGATGCACAAAACCATCTCTTCTCACCAAGATCTCGCAGGGATTAGACTGGGAAACATGTACTGCGATCCTTTGTTGGGGTCTGGTGGGCACAAAATAGCTTCGAGGCAGAGGTGGACTCCGACGGCTATGCAGCTTCAGATTCTGGAGCGGATATTTGATCAGGGGACTGGAACTCCCAGCAAGGAAAAGATCAAGGAGATCACTGCTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTTTATAACTGGTTTCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCACCTGGTGTTAATGCAGAATCAGAAGTAGAGACCGAGGTTGATTCCAAAGATAAGAAGACAAAGGCTGACGATTTTTGGTCCCAGCTCAATGTTTCTGCTGGGCCTTCTGATAATTTAGGTTTCCAGAACCATGATGATCTGCAGTACTTGAATGAGAATCCAGAATCCAACAAACCAGATTCTGTTTTCCCGTCTGATGGGAGTTTAAGATCCACTAGAAATTTCAACCATGTGCCTGTTTTCGATGGGCTGCTATCAAACCCCGGGAATGGCTATCTTACTGGAAAAATAGAAGCTCCCGAGAACTACGACTTATACCAGCCATCAGACGACTTCGACATGGCAGGCTGA 804 0.4801 MVNVMDWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISSHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVAPGVNAESEVETEVDSKDKKTKADDFWSQLNVSAGPSDNLGFQNHDDLQYLNENPESNKPDSVFPSDGSLRSTRNFNHVPVFDGLLSNPGNGYLTGKIEAPENYDLYQPSDDFDMAG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00201 267 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Viun5g00201 267 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Viun5g00201 267 MobiDBLite consensus disorder prediction 143 172 - -
Viun5g00201 267 CDD homeodomain 85 147 IPR001356 GO:0003677
Viun5g00201 267 SMART HOX_1 83 150 IPR001356 GO:0003677
Viun5g00201 267 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Viun5g00201 267 Gene3D - 86 151 - -
Viun5g00201 267 PANTHER WUSCHEL-RELATED HOMEOBOX 13 6 265 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00201 Viun-Chr5 1186055 1189191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00201 21 267 Wox Gene Family AT4G35550 53.414 2.50e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun5g00201 Homeodomain 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00201 - - gmx:100784355 479.944