Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00193 ATGGTCGCCGGCATTGACATGTCACTCGACGACATTATAAGGAGCTCCGCCGAGGCGGCGGCGACTCGTCGGCGATTCACGTTTGTTCGCAACCCGGTCAGAGCGACGCCGTATCCCGTTCCGCGGGCAAGGCATCGCGGAATGATTCCAGAAATGGTTTTCGAAGATGACGGTGCCGCTATGATCGAAAGCGGAACCAAACTCTTGATATCTAACTTGGATCTTGGAGTTTCAAACGGTGATATGAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGATGCTCCATTCATTATGATCAGAATGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTTATGAGACACTCTGATGCTTTATCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTCGTTGGAACTAGTAGTCCTGTTGTTGCGCCTCTTCATCAAAATAACTTATTGGGACCAAGTGCTTCACTTCTAAGCAAAGGAGAAAGAGTTGGGGGTAGGGGGTTCCACAATGACTTCGTACAGGGCTACATTCCAAGGGTCCATGGAGAAGAGAAGGGATATATTCGAAAGTTATATTTTACAGATCTTGGTCATGCTTTGGAGAGGCCTCACCGCGTTCCGATAGGCCACGCAAAAGTAAAGAACAATAATAGAAAAGTGACTGCTAAAGATCTTGACGATGACTTGGAGAGGTATCACCTAGAGGCTAAGCGGATAAAGCAACAAAATGGAAAGTGA 759 0.4625 MVAGIDMSLDDIIRSSAEAAATRRRFTFVRNPVRATPYPVPRARHRGMIPEMVFEDDGAAMIESGTKLLISNLDLGVSNGDMKLLFSEEGELKRCSIHYDQNGRSKGTAEVVFMRHSDALSAIKKYNNMRLDGKPLQIELVGTSSPVVAPLHQNNLLGPSASLLSKGERVGGRGFHNDFVQGYIPRVHGEEKGYIRKLYFTDLGHALERPHRVPIGHAKVKNNNRKVTAKDLDDDLERYHLEAKRIKQQNGK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00193 252 CDD RRM_THOC4 66 140 - -
Viun5g00193 252 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 243 - -
Viun5g00193 252 Gene3D - 60 142 IPR012677 -
Viun5g00193 252 SUPERFAMILY RNA-binding domain, RBD 61 142 IPR035979 GO:0003676
Viun5g00193 252 SMART rrm1_1 67 139 IPR000504 GO:0003723
Viun5g00193 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
Viun5g00193 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Viun5g00193 252 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00193 Viun-Chr5 1144083 1146282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00193 65 141 Eukaryotic Initiation Factors Gene Family AT2G23350 33.766 5.98e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00193 K12881 - gmx:100785926 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00193 5 1144083 1146282 Viun5g00193 5 1144083 1146282 ECH