Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00187 ATGGCCGGAAAAGGAGATGGTCCTGCCATCGGAATCGATCTCGGCACCACCTACTCCTGTGTCGGAGTGTGGCAGCATGACCGTGTAGAAATCATCGCCAATGACCAGGGTAACAGGACGACGCCGTCTTACGTCGCTTTTACCGATTCCGAACGGTTGATCGGTGACGCCGCTAAGAATCAGGTCGCCATGAACCCTATCAACACCGTTTTTGATGCTAAGCGTTTGATCGGAAGGAGATTTTCTGACACAACCGTCCAGAGTGACGTGAAGTTGTGGCCGTTCAAAGTTGTTGCTGGTCCTGCTGACAAGCCTATGATTGTTGTAAACTACAAGGGTGAGGAGAAGCAGTTTGCTGCTGAGGAGATTTCCTCTATGGTCCTCATGAAGATGCGTGAGATTGCCGAGGCTTATCTCGGATCAGCTGTGAAGAATGCTGTGGTCACAGTTCCTGCATACTTCAACGATTCCCAGCGTCAGGCTACAAAGGATGCTGGAGTTATTGCGGGCCTTAATGTCATGCGAATCATCAATGAACCCACGGCTGCCGCCATTGCTTATGGTCTTGACAAGAAAGCCACTAGTGTGGGTGAGAAGAACGTCTTGATCTTTGATTTGGGCGGTGGAACTTTTGATGTTTCTCTCCTCACTATTGAGGAGGGTATTTTTGAAGTTAAGGCCACTGCCGGAGATACTCATCTTGGAGGTGAAGATTTTGACAACAGAATGGTTAACCATTTTGTTCAGGAGTTTAAGAGGAAGCACAAGAAGGATATCAGTGGGAACCCAAGGGCTCTAAGGCGATTGAGGACTGCCTGCGAGAGGGCGAAGAGGACTCTCTCGTCTACTGCACAGACCACAATTGAGATTGATTCTCTTTACGAAGGTGTTGACTTCTACACAACTATCACCCGTGCTAGGTTTGAGGAGCTGAACATGGATCTGTTCAGAAAGTGTATGGAACCTGTTGAAAAATGTCTGAGGGATGCAAAGATGGACAAGAGCACCGTCCACGATGTTGTCCTAGTTGGTGGATCCACAAGAATTCCCAAGGTGCAGCAGCTGTTGCAAGATTTCTTTAATGGTAAGGAACTTTGCAAGAGTATCAATCCAGACGAGGCTGTTGCCTATGGAGCTGCTGTTCAGGCAGCAATATTGAGCGGTGAGGGTAATGAGAAAGTGCAGGACCTGTTGCTGTTGGACGTTACACCCCTTTCTCTTGGTTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACCACCATTCCCACCAAGAAGGAGCAAGTGTTTTCTACTTATTCCGACAACCAACCCGGTGTCTTGATTCAGGTGTACGAGGGAGAGAGAGCTAGAACCAGGGACAACAACTTGTTGGGTAAATTTGAGCTTTCTGGCATTCCCCCTGCACCCAGGGGTGTTCCTCAGATCACCGTTTGCTTTGACATAGATGCCAATGGTATCTTGAATGTCTCAGCCGAGGACAAGACCACCGGTCAGAAGAACAAGATTACTATTACCAATGACAAGGGTAGACTCTCAAAGGACGAGATTGAGAAGATGGTCCAGGAGGCTGAAAAGTACAAGGCAGAGGATGAGGAGCACAAGAAGAAGGTTGATGCAAAGAATGCCCTGGAAAATTATGCCTACAACATGAGGAACACTATTAAGGATGAGAAGATTGCTTCCAAGCTTTCTGCTGATGATAAAAAGAAAATTGAAGATGCCATTGAGAGTGCTATTCATTGGTTGGACAGCAACCAACTTGCCGAAGCAGATGAGTTCGAGGACAAGATGAAGGAGCTTGAGAGCATTTGCAATCCAATCATTGCAAAGATGTACCAGGGTGCAGGTGCTCCCGACATGGCTGGAGGCATGGATGAAGATGTTCCACCATCTGCGTCTGGTGGTGCTGGTCCCAAGATCGAAGAAGTTGATTAA 1950 0.4779 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDTTVQSDVKLWPFKVVAGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSADDKKKIEDAIESAIHWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGAPDMAGGMDEDVPPSASGGAGPKIEEVD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00187 649 Gene3D - 192 366 - -
Viun5g00187 649 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524|GO:0140662
Viun5g00187 649 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Viun5g00187 649 FunFam Heat shock 70 kDa 235 318 - -
Viun5g00187 649 MobiDBLite consensus disorder prediction 623 649 - -
Viun5g00187 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Viun5g00187 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Viun5g00187 649 Coils Coil 518 541 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 337 353 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 396 415 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 477 493 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 36 48 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 146 166 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 209 219 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 369 389 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 8 21 - -
Viun5g00187 649 PRINTS 70kDa heat shock protein signature 58 66 - -
Viun5g00187 649 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Viun5g00187 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Viun5g00187 649 FunFam Heat shock 70 kDa protein 539 649 - -
Viun5g00187 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Viun5g00187 649 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Viun5g00187 649 FunFam Heat shock 70 kDa 391 545 - -
Viun5g00187 649 Gene3D - 71 126 - -
Viun5g00187 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Viun5g00187 649 Gene3D - 545 649 IPR029048 -
Viun5g00187 649 Gene3D - 10 384 - -
Viun5g00187 649 Gene3D Actin; Chain A, domain 4 235 318 - -
Viun5g00187 649 FunFam Heat shock protein 70 10 196 - -
Viun5g00187 649 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Viun5g00187 649 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Viun5g00187 649 FunFam Heat shock 70 kDa protein 197 259 - -
Viun5g00187 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Viun5g00187 649 FunFam Heat shock 70 kDa protein 71 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00187 Viun-Chr5 1076684 1079672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00187 1 649 Calmodulin-binding Proteins AT3G12580 93.395 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00187 K03283 - gmx:100787543 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00187 5 1076684 1079672 Viun5g00187 5 1076684 1079672 ECH
Viun5g00187 5 1076684 1079672 Viun1g02223 1 33273119 33276013 ECH
Viun5g00187 5 1076684 1079672 Viun7g01158 7 13029431 13032592 ECH
Viun1g02223 1 33273119 33276013 Viun5g00187 5 1076684 1079672 ECH
Viun7g01158 7 13029431 13032592 Viun5g00187 5 1076684 1079672 ECH