Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00181 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAGCCTAATCCGCCGGCAGGAATTGGCAACCAGAATCCACATATTCCACCACCTCTTCAGCCGTCACCTTCATCAGTGACGGCCGCTATCGGAGGTGGTGGTAGTTGCGGTAGCTACCCGGGCTCGATTAGACCGGGATCAATGGCTGATAGAGCTAGAATGGCGAAGATACACCAACCTGATGCAGGACTCAAATGTCCGCGATGTGAATCTGCCAACACCAAGTTTTGCTACTACAACAACTACAGCCTTTCACAGCCGCGGCACTTTTGCAAGACCTGCCGGCGTTACTGGACCAGAGGCGGTGCACTCAGAAACGTGCCGGTTGGTGGTGGTTGCAGAAGGAACAAAAGAAGCAAAGGAAGTGGCGGTAGATCGAAGTCTCCGATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTCCCAACTCCAACGCAAACTCAATTTCCATTCTTGACCTCCTTGCATCACTATAACAGTGACTATGGAGGCATTGGATCTCATTTTGGGACGATGACAACGACGACACCTTTGGTGGCTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTATGTTGTCAAATGGACTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAACAAGTTCAGCAGCAGTTTCCGTTTTTGAGCACTGAGCCACAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAACAACAATGCTGAACCTCCAAGTTATGCAAAAGATGGAGTCAGGTTTAACATTCGTTCTAAACTAGATTCCATTTCTGGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAGGAAAATATTCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGTGGTTCGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACTTGTTGTGA 1089 0.4747 MVFPSLPIYLDPPNWSQQQPNPPAGIGNQNPHIPPPLQPSPSSVTAAIGGGGSCGSYPGSIRPGSMADRARMAKIHQPDAGLKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHFPTPTQTQFPFLTSLHHYNSDYGGIGSHFGTMTTTTPLVARNSSDVEFQIGTGSASSLGNSMLSNGLGEQWRLNNLQQQVQQQFPFLSTEPQIGLFQFGGGENNNAEPPSYAKDGVRFNIRSKLDSISGLSGLMPQVNTIKMEENIQGLNLPKNLLMGGSGNDALWNGSGNAWSEVPCFTPSNNHLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00181 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 250 IPR045174 GO:0003700|GO:0006355
Viun5g00181 362 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Viun5g00181 362 MobiDBLite consensus disorder prediction 27 41 - -
Viun5g00181 362 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Viun5g00181 362 MobiDBLite consensus disorder prediction 144 166 - -
Viun5g00181 362 MobiDBLite consensus disorder prediction 12 26 - -
Viun5g00181 362 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Viun5g00181 362 MobiDBLite consensus disorder prediction 12 49 - -
Viun5g00181 362 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00181 Viun-Chr5 1047282 1049288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00181 1 138 C2C2-Dof Transcription Factor Family AT2G37590 56.552 3.19e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g00181 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00181 - - vun:114185583 636.721