Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00172 ATGACAAAACAAAATAAGGAGTGGGCTATTGGAATCGATCTTGGCACTACATACTCTTGCTTTGCTGTATGGAAAGAACAACAGTGTAGAGTGGAAATCATTCACAACGATCAAGGCAATAGACTCACTCCTTCTTGTGTTTCTTTCACAGAAAATCAAAGGTTGATTGGCGATGCCGCTAAGAACTTGGCTTCCATTAACCCAACAAACACTGTCTTTGACGTAAAAAGGTTGATTGGCAGAAAATACAGTGACCCCGTTATTGAGAATGATATAAGGCTGTGGCCATTTAAGGTCATTGCTGATTCTGATGACAAACCCATAATAGTTGTTTCCTATAAGGGTGAGGAGAAACGCATTTCACCTGTAGAAATCTCATCTATGATCCTTACAAAGATGCGTGAGATTGCAGAATCATACTTGGACTCAGGCGTTAAGAATGTTGTGGTAACTGTGCCGGCTTATTTCAATGATTCTCAGCGACGAGCAACCAAAGATGCTGCTACTATTGCTGGCTTCAATGTTAAGCGGATAATCAATGAACCCACGGCTGCAGCTCTGGCTTATGGGCTTGAGAACAAAGGTAACTGTGATGGAAAGAGAAAGAGAAATATTTTCATCTTTGATCTTGGTGGTGGTACATTTGATGTGTCTATTCTCAGAATGAAAGATGTTTTTGAAGTCAAAGCAATTGCGGGTGACACTCATCTCGGAGGAGAAGACATGGACAACAGGATGCTGAAGTACTGCGTAGAGGAATTCAAGAGAAAGAATAGAGTGGACATTAGTGGAAACCCGAAAGCTCTGAGAAGGTTGAGAAGTGCGTGTGAGAGGGCAAAAAGGACACTCTCACATGCCGTTGATACCACCATTGAGGTAGATTCTTTATCTGGAGGCATTGATTTCCATTCATCAATGACTCGCACGAGATTTGAGGAACTCAACATGGACCTATTTAGAAAGTGTATGGAGACGGTAGATAAGTGTGTTGTTGATTCTAAGATGAACAAGAGTGATATAGATGAGATTGTACTGGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAACCGCTATTGCAAGACTACTTTAAGGGAAAAGATTTATGCAAGAGAATTAACCCTGATGAGGCGGTTGCTCACGGTGCTGCTGTGCTGGCTGCTTTATTGAGTGACGGCATTAAATATGTTCCTGAATTGGTGTTATTGGATGTTACACCGCTATCTCTTGGTATATCTTTAAACGAAGATCTCATGAGTGTTGTGATTCCTAGGAATACTGTTATTCCGGTTAAAAGAAAGAAAGAATATACAAGAGTCTTAGACTTCCAATCCTCCATCCCAATCAGGGTTTACGAGGGTGAGAGGACAAGAGCCAGCGATAACAATTTGCTTGGTTCCTTTAACTTTTATGGAAGTCCAAATGCTCTTCGAGGTCATCCTTTAACTGTATGCTTCAGTATAGATGCTGATGGTATCATAAGTGTAACTGCTGAGGAAGAAAGCAGTGGAAGAAAGAACAGTATTACCATAACCAACGACAAGGAGAGACTATCAACTGAACAAGTTACGAGAATGATGGAAGAAGCCGAGAAATATAAGGCTGAAGACAAGGAGTACCAAAAGAAGGTTGAAGCAATTAATGCTTTGGAAGATTTCATTTACAAGATAAGAAAAGCTGCAGAGGATGTTGATAACAGTTTTAAGCTTGATCCACATCACAAAAAGATCAACGTGGCAATTGCAGAGGCCAGAAAATTGCTTGATGCTAGCCAGGAGACAGAGAAAGATGTGTTTGTGGATCATCTGCGCAAGGTCAAGAATCTCATTGAACCCATCATGAAGATCAACTAG 1851 0.41 MTKQNKEWAIGIDLGTTYSCFAVWKEQQCRVEIIHNDQGNRLTPSCVSFTENQRLIGDAAKNLASINPTNTVFDVKRLIGRKYSDPVIENDIRLWPFKVIADSDDKPIIVVSYKGEEKRISPVEISSMILTKMREIAESYLDSGVKNVVVTVPAYFNDSQRRATKDAATIAGFNVKRIINEPTAAALAYGLENKGNCDGKRKRNIFIFDLGGGTFDVSILRMKDVFEVKAIAGDTHLGGEDMDNRMLKYCVEEFKRKNRVDISGNPKALRRLRSACERAKRTLSHAVDTTIEVDSLSGGIDFHSSMTRTRFEELNMDLFRKCMETVDKCVVDSKMNKSDIDEIVLVGGSSRIPKVQPLLQDYFKGKDLCKRINPDEAVAHGAAVLAALLSDGIKYVPELVLLDVTPLSLGISLNEDLMSVVIPRNTVIPVKRKKEYTRVLDFQSSIPIRVYEGERTRASDNNLLGSFNFYGSPNALRGHPLTVCFSIDADGIISVTAEEESSGRKNSITITNDKERLSTEQVTRMMEEAEKYKAEDKEYQKKVEAINALEDFIYKIRKAAEDVDNSFKLDPHHKKINVAIAEARKLLDASQETEKDVFVDHLRKVKNLIEPIMKIN 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00172 616 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 550 IPR029047 -
Viun5g00172 616 Gene3D - 73 128 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 60 68 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 148 168 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 340 356 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 372 392 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 398 417 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 213 223 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 478 494 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 38 50 - -
Viun5g00172 616 PRINTS 70kDa heat shock protein signature 8 21 - -
Viun5g00172 616 Pfam Hsp70 protein 9 614 IPR013126 GO:0005524|GO:0140662
Viun5g00172 616 Coils Coil 522 549 - -
Viun5g00172 616 SUPERFAMILY Actin-like ATPase domain 202 389 IPR043129 -
Viun5g00172 616 Gene3D - 194 369 - -
Viun5g00172 616 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 613 IPR029048 -
Viun5g00172 616 Gene3D - 10 387 - -
Viun5g00172 616 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Viun5g00172 616 Gene3D - 546 615 IPR029048 -
Viun5g00172 616 FunFam heat shock 70 kDa protein-like 73 128 - -
Viun5g00172 616 Gene3D Actin; Chain A, domain 4 238 321 - -
Viun5g00172 616 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Viun5g00172 616 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 545 IPR029047 -
Viun5g00172 616 PANTHER HEAT SHOCK PROTEIN 70KDA 9 572 IPR013126 GO:0005524|GO:0140662
Viun5g00172 616 ProSitePatterns Heat shock hsp70 proteins family signature 2. 207 220 IPR018181 -
Viun5g00172 616 FunFam Heat shock protein 70 10 200 - -
Viun5g00172 616 FunFam Heat shock 70 kDa 238 321 - -
Viun5g00172 616 FunFam Heat shock 70 kDa protein 393 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00172 Viun-Chr5 1002574 1004632 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00172 1 613 Calmodulin-binding Proteins AT3G12580 61.750 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00172 K03283 - gmx:102667578 768.459