Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00168 ATGGCCAACGACGAGAAGGAATTGGTCATAGGAATTGATCTTGGCACAACATACTCGCGTGTTGCAGTATGGCAGCAACAATACAATAGGGTGGAGATCATCCATAATGACTACAGCAATAACATTACTCCTTCCTGTGTTGCTTTCATGGACCAACAAAGGTTTATAGGAGATGTTGCTGCAGATCAAGCTGTTATTAATTCAGAGAACACCATCTTCGATGCTAAGAGGTTGATTGGAAGAAAATACAGTGATCCTTTTGTTCAAAAACATAAAGTGATGTGGCCATTTAAGGTTGTTGCTGGTGTTAATGACAAACCTATGATTTCTATCAAGTATAAGGGTAAGGAGAAGAAACTTTGTGCGGAGGAAGTATTGTCTATGATCCTCTCAAAAATGCGAGATATTGCAGAGACATACATGAAAAAGCCTGTGAAGGATGCAGTGGTTACTGTACCCGCCTATTTTAATGATTGTCAGCGCAGAGCCATCATTGATGCTGGTGCTATTGTTGGCCTCAATGTTATTCGTGTACTCAATGAATCTACGGCTGCAGCACTTGCATTTGGTCTTGATAATAGAAAAGGTTGTGTTGGAGTGCGAAATATTTTTGTTTTTGATTTTGGTAGTGGGGCATTCCATGCGTCTCTTCTTACTATGGAAAATAATGTCTTTCAAGTTAAGGCTACTGCGGGAAACACCCAGGGAGGAGAGGACATTAATAACAAAATGGTGAACTACTTTGTGAACAAGATGAGAAGGAAATATAAGGTGGACATAAGTGAAAATCCACGAGCCTTAATGAAGATGAAAAGAGCTTGCGAAGGAGTAAAAAGGACTCTTTCGTATGCCATTACTACAAAGATTGAGATAGATGGTTTATTTGAAGGTATGAATTTGCATTCTTCAATGACCCGAATGAAATTTGAAGAAATTAATATGGAGATTTTTGACGAGTGTATGGAGACTGTAAATAGGTGTTTGAAGGATGCTAAGATGGACAAAAGTAGTGTGCATGATGTTATTCTTGTTGGTGGTTCTTCTAGAATTCCCAAAGTGCAGCAGCTGCTTCAAGACTTTTTCAATGGCAAGAATCTTTGCAAAAGCTTAAACTCTGATATAGCTGTTGCTTATGGTGCAGCAGTTCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCTGACTTCGTGTTGTTTGATGTTACACCACTGTCAGTTGGAACGAGTGTTGCGGGAGATTTCATGAGTGTTGTCATTCCTAAAAATACTACTATTCCGCTAAAGAGGACTAAAGTATATGATACAGATAAAGACAGAGAAACCTCATCCATTTTTAAGGTTTACGAGGGTGAGAGAACTAGAGCTAGGAATAATAATTTGTTGGGTTCTTTTGTTATTTCTGGCTTTCCTTGTGAAGTGACTTTTGCGGTAAATGAAAATAGTATTCTATCCGTTTTTGCTGAGGATAAAGCAACCGGTAATAGGAATGAAATAACAATAGTCAATGACACAGGAAGACTAACAACTGCAGAAATTAGTATAATGATTCAGGAAGCAGAGAATTACAAGTCTGAAGACGAGAAGTTTCTTAGGATTACCATTGCAAAGAATGATTTAGATGATCTTGTTTACAAAATCGAAAAGGCTTTAGAGAGAGAGGATATCAGCTCAAAGTTGAGCTCGAAAGAAAAGGAAGACATCCGTTGTACAATTTCTAGAGCTATTAATATGTTTCATCGTCTGCACCAAATGAAAGATGTGGTTGCTGTTGAAGACTGTCTCAAAGAACTTAAAACAATCTTTGAACGAATTATGGTTGTGGAGAAGGTTCGTAAAAGAAAGAGATCATCATAG 1857 0.3807 MANDEKELVIGIDLGTTYSRVAVWQQQYNRVEIIHNDYSNNITPSCVAFMDQQRFIGDVAADQAVINSENTIFDAKRLIGRKYSDPFVQKHKVMWPFKVVAGVNDKPMISIKYKGKEKKLCAEEVLSMILSKMRDIAETYMKKPVKDAVVTVPAYFNDCQRRAIIDAGAIVGLNVIRVLNESTAAALAFGLDNRKGCVGVRNIFVFDFGSGAFHASLLTMENNVFQVKATAGNTQGGEDINNKMVNYFVNKMRRKYKVDISENPRALMKMKRACEGVKRTLSYAITTKIEIDGLFEGMNLHSSMTRMKFEEINMEIFDECMETVNRCLKDAKMDKSSVHDVILVGGSSRIPKVQQLLQDFFNGKNLCKSLNSDIAVAYGAAVQAALLSEGIKNVPDFVLFDVTPLSVGTSVAGDFMSVVIPKNTTIPLKRTKVYDTDKDRETSSIFKVYEGERTRARNNNLLGSFVISGFPCEVTFAVNENSILSVFAEDKATGNRNEITIVNDTGRLTTAEISIMIQEAENYKSEDEKFLRITIAKNDLDDLVYKIEKALEREDISSKLSSKEKEDIRCTISRAINMFHRLHQMKDVVAVEDCLKELKTIFERIMVVEKVRKRKRSS 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00168 618 Gene3D - 73 128 - -
Viun5g00168 618 SUPERFAMILY Actin-like ATPase domain 202 388 IPR043129 -
Viun5g00168 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 536 607 IPR029048 -
Viun5g00168 618 Gene3D - 10 385 - -
Viun5g00168 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Viun5g00168 618 FunFam Heat shock 70 kDa protein 4 46 121 - -
Viun5g00168 618 FunFam Heat shock 70 kDa 236 319 - -
Viun5g00168 618 Gene3D Actin; Chain A, domain 4 236 319 - -
Viun5g00168 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Viun5g00168 618 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Viun5g00168 618 FunFam Heat shock cognate 70 kDa protein 2 320 367 - -
Viun5g00168 618 Gene3D - 538 608 IPR029048 -
Viun5g00168 618 Pfam Hsp70 protein 9 606 IPR013126 GO:0005524|GO:0140662
Viun5g00168 618 Gene3D - 194 367 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 338 354 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 370 390 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 396 415 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Viun5g00168 618 PRINTS 70kDa heat shock protein signature 469 485 - -
Viun5g00168 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Viun5g00168 618 PANTHER HEAT SHOCK PROTEIN 70KDA 9 565 IPR013126 GO:0005524|GO:0140662
Viun5g00168 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 541 IPR029047 -
Viun5g00168 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 537 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00168 Viun-Chr5 965709 967667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00168 1 607 Calmodulin-binding Proteins AT3G12580 55.105 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00168 K03283 - gmx:102667578 787.334