Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00145 ATGGATGAAGATATTATGTCATCTCCTAATAGATTGGTGGAATGTCGAATATGTCACAGTGAGGATGAAGATTCAAACATGGACACACCCTGTTCTTGCTGTGGAACATTGAAGTATGCACACCAAAACTGTGTTCAAAGATGGTGCAATGAGAAGGGTGATACTACATGTGAAATTTGCCAACAGCAACTCAAGCCTGGGTATACTGTACCTCCACTGCCTCCTCTATTACACTATGGTTCTTCTCCAATAAATTTTGGAGGGAACTGGGAGATTTCAAGAAGGGAACTTCATAACCATCAGTTCACAGCATTTCATGAATTCCTAGACCTAGATTTTGAATATGCAGCAGCACCCTCTACAAGAAGCTTGATATTTTGCCGCATTGTTACCATTATTTTTATTGGTCTTCTTCTTCTACGCCATACTCTTCCAATCATATTTATACTCAGAGGAGCAAGAGCACATTCATTCACAGTGTTTATGTCAGTGGTGTTGAGAAACATTGGAATGATTGTACCATTTTATATAATGGTTAAAGCTATTATTTCAATCCAACAGTTTCAATACCAGGGTCATGAGCAATCTCCTATGCAAGCACACTAG 606 0.3894 MDEDIMSSPNRLVECRICHSEDEDSNMDTPCSCCGTLKYAHQNCVQRWCNEKGDTTCEICQQQLKPGYTVPPLPPLLHYGSSPINFGGNWEISRRELHNHQFTAFHEFLDLDFEYAAAPSTRSLIFCRIVTIIFIGLLLLRHTLPIIFILRGARAHSFTVFMSVVLRNIGMIVPFYIMVKAIISIQQFQYQGHEQSPMQAH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00145 201 Coils Coil 198 201 - -
Viun5g00145 201 SUPERFAMILY RING/U-box 13 64 - -
Viun5g00145 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Viun5g00145 201 Pfam Protein of unknown function (DUF3675) 66 182 IPR022143 -
Viun5g00145 201 CDD RING_CH-C4HC3_MARCH 15 61 - -
Viun5g00145 201 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Viun5g00145 201 SMART ringv_2 14 61 IPR011016 GO:0008270
Viun5g00145 201 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Viun5g00145 201 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 189 IPR033275 -
Viun5g00145 201 FunFam Zinc finger family protein 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00145 Viun-Chr5 858034 860148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00145 2 107 C3H Transcription Factor Family AT2G37950 34.211 8.20e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00145 - - var:108321682 364.385