Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00138 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTACAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTCGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCGTCTTACACGACAAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCTAAGTTTGATGAGAAGACTGGGACTTCTCACGTCAATGGAGCCCATGATACTGCAAAGCTTGCTGGCCTTCTTGAGAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGATATCCTAATTACCAAGAACCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGTTCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAGGAGAGACTCAAGGAAGGAGAAGCGGCTGATGAGGAACAGAAGAAAGTGAAAAAAGATGTCAAGAAGAAAGGTTCTTCATCTGCAAAGGATGGCACTGCAAAATCCACCATTTCAAAGAAGAAAGGAAGTGGCTCTGACGAAGACCGCACATCGCCTACTCACAGACAAATTGAAGAGAAAGAGGATGCTCATGACGAAGATGATGAGGATGATGGCGTGCAATGGCTGACAGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGCGCTGTGACAGCCGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAATGAAAATGGTGGTTCTCAGAATGGTAACTCAATGAACTACGGGACTGTAGTCGCTGAAGTGAAAGCAAATTTGAAGAAAGGTCTTGGAGCAACCGAATTGCTTTCTCGTCTTGCAGCACTTTCTGCACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTCTGTTCGAGGGAACAGAGAAAGGTTTTGGTAAAGAAACTCTTAAGAAGAAGAACTATTTTGCTGCCTCTGTTACAGAGGAGGGATCCCAGATTTTATTGCTTAATGCTATTGAGGAATTCTGTTGCAAGTCTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGACACTGTACGATGCTGATGTCTTGGAGGAAGAGCACATAGTTATGTGGTATCAAAAGGGACTGAAAGGCGATAACAAGAGCTCCAAGATTTGGAAGAATGCTCAACCTTTCATTGACTGGCTTCAGAACGCAGAATCGGAATCGGATGAAGAATAA 1329 0.4349 MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKDVKKKGSSSAKDGTAKSTISKKKGSGSDEDRTSPTHRQIEEKEDAHDEDDEDDGVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNENGGSQNGNSMNYGTVVAEVKANLKKGLGATELLSRLAALSAPAQEKMSALVEALFEGTEKGFGKETLKKKNYFAASVTEEGSQILLLNAIEEFCCKSNSNALKEVALVLKTLYDADVLEEEHIVMWYQKGLKGDNKSSKIWKNAQPFIDWLQNAESESDEE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00138 442 ProSiteProfiles W2 domain profile. 283 442 IPR003307 GO:0005515
Viun5g00138 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Viun5g00138 442 SMART 542_3 351 438 IPR003307 GO:0005515
Viun5g00138 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Viun5g00138 442 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Viun5g00138 442 FunFam Eukaryotic translation initiation factor 5 289 433 - -
Viun5g00138 442 MobiDBLite consensus disorder prediction 147 236 - -
Viun5g00138 442 Coils Coil 159 179 - -
Viun5g00138 442 Gene3D - 105 145 - -
Viun5g00138 442 MobiDBLite consensus disorder prediction 148 225 - -
Viun5g00138 442 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Viun5g00138 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Viun5g00138 442 CDD W2_eIF5 296 440 - -
Viun5g00138 442 MobiDBLite consensus disorder prediction 270 290 - -
Viun5g00138 442 SUPERFAMILY ARM repeat 292 436 IPR016024 -
Viun5g00138 442 Gene3D - 2 104 - -
Viun5g00138 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Viun5g00138 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Viun5g00138 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Viun5g00138 442 Gene3D - 290 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00138 Viun-Chr5 845811 848503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00138 1 435 Eukaryotic Initiation Factors Gene Family AT1G77840 62.358 3.42e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00138 K03262 - gmx:100777906 739.569