Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00133 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTCCAACCCGAGCTTCCTCCTCCAGCCTCCACCTCCACCTCCACCTCCCTCCCCCCACTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCTCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCCGCCCTCGTCGTCCCTCTCCCCCTCCGCCAACCGCTTCGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTTCTCTTCGCCATCCCCAGCGCCGATGGCACCGCCACCCTAAGGTACGTTCACACCGGCGACTTCCGCTTTTCTAGCTCTATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACCACATATTGTAACCCTAAGTTCGTTTTTCCCTCGCAAGAGGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGATTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATCCATGTTGTTGGATGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAGAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCAGTCAAGTCCAAGGATGCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGACGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGTGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATTAGGAAGCATTTTGCTGGGTTGGTCGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGCTTTTGTGGCGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCTGGTCAAGGCATGGACAAAAAAGTCATTCCATTGGAGGAGATAAAAAGTGATAAGAGTATTGATCCAGATGTGGCTGTGGGTTTGCCTTCTTTTGTGGGAGATACTTGTACTGAAGATCCTACTTTGCTGAGCGACGAAGAAAAAGAGAAAATAATTGGAGAACTTAGCTTTTGTTTGCCCACATGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATATCTGGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCACTTGCAAAACCTAGCCTTAATAATGCAAACAGCACTAGGAAAAATATTGACATTTTTTCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAAGTACCCAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAGTGACAGTAAGCCAAACAAAAAAGGCAAAGTCAAAGCAAAATCTGAGCCAAGTGGTTCAAAGCAGTCCACGCTTACAAGATTCTTCAGGAAAGTAACACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAGCAAAGCTCTGAAGTTGAAGACTTGTTACCAACTGATGTTGGACAAATGTACAAGGATGAAATTGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTTGATATATATTACTGTAATTCTGGAAATCTTACCGAAAATGAATTATCAGTTCAAAAGGAGAGCAAAATTGATAAACCATTAGTAAAGAAACATGCATCAGAGGAAATAAGAATTATGCCTGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAACCCTATAGAACATGCATGTTGGAGAGATGGACAGCCAGCACCATATTTACATATTGCACGAACCTTCAACCTGCTAGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCACTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCCGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCAATTGAAGAGGCATGTGGAACAAGTCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATCTCGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTTCTTGCACCACCAACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGTATATCTCGCAAGAAAGGAATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGAACCTTGGTCAGGAACTTAAGGATAGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGAAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTTGGTTTCAAGTTTATCGATGGTTCCAGGCATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGATGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATTGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCATTAGTTACTGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTTTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTGCGCCATAGACGAAAGTATCTGAAGGATTTATTCTATTATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAATTACTATTGAAGCAGATGATGCTTGCTTAGCTTGTGAAGCCACATTAACCAAGGTAAATGCTTTCCTGGAAGAGGCAATCCAGTCTTCTTGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCAGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCACGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCTGAAACAGAGGAGTATCAAAGCGTATGTCGTGTGATGTCTGGTTTTTCAGATTCATTTTATATAGAGATGAAAGAATTTTTCTCTGGGGACAGAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCAGAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGGGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAATAG 4209 0.4362 MDSETLDSTQLFLTALKTLQPELPPPASTSTSTSLPPLPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQPLRIDGAQVTLLDANHCPGAVQFLFAIPSADGTATLRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERIERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKSKDAFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADKIRKHFAGLVDETANKHEFLRGFCGGLGEVGFKAEKGVSDVLEPGQGMDKKVIPLEEIKSDKSIDPDVAVGLPSFVGDTCTEDPTLLSDEEKEKIIGELSFCLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSLAKPSLNNANSTRKNIDIFSSQDSKSTILRHKVPSPISPAKRKRSSDSKPNKKGKVKAKSEPSGSKQSTLTRFFRKVTPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQMYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLTENELSVQKESKIDKPLVKKHASEEIRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAAIEEACGTSRLKIREMYNKFGDLGDVAQECRQTQRFLAPPTPLLIKDVFSALQKISVQTGSGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMEVVEAYNILPNLDLIVPSLMNKGIDFLVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRHRRKYLKDLFYYEKPGYFEYAKEITIEADDACLACEATLTKVNAFLEEAIQSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDRVLSKKPPYYQTGEAPDIWFCPEVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVTAK 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00133 1402 CDD Adenylation_DNA_ligase_I_Euk 1011 1243 - -
Viun5g00133 1402 Gene3D - 195 351 - -
Viun5g00133 1402 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 976 1242 - -
Viun5g00133 1402 Gene3D DNA ligase/mRNA capping enzyme 1049 1180 - -
Viun5g00133 1402 Pfam ATP dependent DNA ligase domain 1020 1240 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun5g00133 1402 CDD SNM1A-1C-like_MBL-fold 46 192 - -
Viun5g00133 1402 FunFam DNA ligase 6 48 213 - -
Viun5g00133 1402 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1044 1052 IPR016059 GO:0003909
Viun5g00133 1402 FunFam DNA ligase 1049 1180 - -
Viun5g00133 1402 Pfam DNA ligase N terminus 774 950 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00133 1402 Pfam ATP dependent DNA ligase C terminal region 1266 1371 IPR012309 GO:0003910|GO:0006281|GO:0006310
Viun5g00133 1402 Pfam DNA repair metallo-beta-lactamase 269 374 IPR011084 -
Viun5g00133 1402 FunFam DNA ligase 1245 1402 - -
Viun5g00133 1402 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 374 IPR036866 -
Viun5g00133 1402 FunFam DNA ligase 751 1022 - -
Viun5g00133 1402 Gene3D - 1031 1244 - -
Viun5g00133 1402 Gene3D - 48 373 IPR036866 -
Viun5g00133 1402 Gene3D - 751 1022 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00133 1402 Gene3D - 1245 1401 IPR012340 -
Viun5g00133 1402 NCBIfam ATP-dependent DNA ligase 832 1390 IPR000977 GO:0003910|GO:0005524|GO:0071897
Viun5g00133 1402 Coils Coil 967 987 - -
Viun5g00133 1402 MobiDBLite consensus disorder prediction 570 648 - -
Viun5g00133 1402 CDD OBF_DNA_ligase_I 1249 1392 - -
Viun5g00133 1402 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 282 1395 - -
Viun5g00133 1402 SUPERFAMILY Nucleic acid-binding proteins 1249 1393 IPR012340 -
Viun5g00133 1402 FunFam DNA ligase 195 351 - -
Viun5g00133 1402 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 754 1004 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00133 1402 ProSiteProfiles ATP-dependent DNA ligase family profile. 1131 1278 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00133 Viun-Chr5 810312 822575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00133 756 1393 Core DNA Replication Machinery Family AT1G08130 38.750 8.41e-162 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00133 - - gmx:100807673 2394