Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00132 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTCCAACCCGAGCTTCCTCCTCCAGCCTCCACCTCCACCTCCACCTCCCTCCCCCCACTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCTCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCCGCCCTCGTCGTCCCTCTCCCCCTCCGCCAACCGCTTCGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTTCTCTTCGCCATCCCCAGCGCCGATGGCACCGCCACCCTAAGGTACGTTCACACCGGCGACTTCCGCTTTTCTAGCTCTATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACCACATATTGTAACCCTAAGTTCGTTTTTCCCTCGCAAGAGGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGATTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATCCATGTTGTTGGATGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAGAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCAGTCAAGTCCAAGGATGCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGACGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGTGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATTAGGAAGCATTTTGCTGGGTTGGTCGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGCTTTTGTGGCGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCTGGTCAAGGCATGGACAAAAAAGTCATTCCATTGGAGGAGATAAAAAGTGATAAGAGTATTGATCCAGATGTGGCTGTGGGTTTGCCTTCTTTTGTGGGAGATACTTGTACTGAAGATCCTACTTTGCTGAGCGACGAAGAAAAAGAGAAAATAATTGGAGAACTTAGCTTTTGTTTGCCCACATGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATATCTGGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCACTTGCAAAACCTAGCCTTAATAATGCAAACAGCACTAGGAAAAATATTGACATTTTTTCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAAGTACCCAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAGTGACAGTAAGCCAAACAAAAAAGGCAAAGTCAAAGCAAAATCTGAGCCAAGTGGTTCAAAGCAGTCCACGCTTACAAGATTCTTCAGGAAAGTAACACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAGCAAAGCTCTGAAGTTGAAGACTTGTTACCAACTGATGTTGGACAAATGTACAAGGATGAAATTGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTTGATATATATTACTGTAATTCTGGAAATCTTACCGAAAATGAATTATCAGTTCAAAAGGAGAGCAAAATTGATAAACCATTAGTAAAGAAACATGCATCAGAGGAAATAAGAATTATGCCTGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAACCCTATAGAACATGCATGTTGGAGAGATGGACAGCCAGCACCATATTTACATATTGCACGAACCTTCAACCTGCTAGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCACTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCCGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCAATTGAAGAGGCATGTGGAACAAGTCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTTCTTGCACCACCAACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGTATATCTCGCAAGAAAGGAATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGAACCTTGGTCAGGAACTTAAGGATAGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGAAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTTGGTTTCAAGTTTATCGATGGTTCCAGGCATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGATGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATTGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCATTAGTTACTGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTTTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTGCGCCATAGACGAAAGTATCTGAAGGATTTATTCTATTATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAATTACTATTGAAGCAGATGATGCTTGCTTAGCTTGTGAAGCCACATTAACCAAGGTAAATGCTTTCCTGGAAGAGGCAATCCAGTCTTCTTGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCAGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCACGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCTGAAACAGAGGAGTATCAAAGCGTATGTCGTGTGATGTCTGGTTTTTCAGATTCATTTTATATAGAGATGAAAGAATTTTTCTCTGGGGACAGAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCAGAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGGGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAATAG 4200 0.436 MDSETLDSTQLFLTALKTLQPELPPPASTSTSTSLPPLPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQPLRIDGAQVTLLDANHCPGAVQFLFAIPSADGTATLRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERIERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKSKDAFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADKIRKHFAGLVDETANKHEFLRGFCGGLGEVGFKAEKGVSDVLEPGQGMDKKVIPLEEIKSDKSIDPDVAVGLPSFVGDTCTEDPTLLSDEEKEKIIGELSFCLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSLAKPSLNNANSTRKNIDIFSSQDSKSTILRHKVPSPISPAKRKRSSDSKPNKKGKVKAKSEPSGSKQSTLTRFFRKVTPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQMYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLTENELSVQKESKIDKPLVKKHASEEIRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAAIEEACGTSRLKIREMYNKFGDVAQECRQTQRFLAPPTPLLIKDVFSALQKISVQTGSGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMEVVEAYNILPNLDLIVPSLMNKGIDFLVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRHRRKYLKDLFYYEKPGYFEYAKEITIEADDACLACEATLTKVNAFLEEAIQSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDRVLSKKPPYYQTGEAPDIWFCPEVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVTAK 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00132 1399 Gene3D - 1242 1398 IPR012340 -
Viun5g00132 1399 Pfam ATP dependent DNA ligase domain 1017 1237 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun5g00132 1399 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 374 IPR036866 -
Viun5g00132 1399 CDD Adenylation_DNA_ligase_I_Euk 1008 1240 - -
Viun5g00132 1399 CDD SNM1A-1C-like_MBL-fold 46 192 - -
Viun5g00132 1399 ProSiteProfiles ATP-dependent DNA ligase family profile. 1128 1275 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun5g00132 1399 FunFam DNA ligase 6 48 213 - -
Viun5g00132 1399 Pfam DNA ligase N terminus 774 947 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00132 1399 Pfam ATP dependent DNA ligase C terminal region 1263 1368 IPR012309 GO:0003910|GO:0006281|GO:0006310
Viun5g00132 1399 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 282 1392 - -
Viun5g00132 1399 Coils Coil 964 984 - -
Viun5g00132 1399 FunFam DNA ligase 1046 1177 - -
Viun5g00132 1399 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 973 1239 - -
Viun5g00132 1399 Gene3D - 1028 1241 - -
Viun5g00132 1399 FunFam DNA ligase 1242 1399 - -
Viun5g00132 1399 Gene3D - 751 1019 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00132 1399 SUPERFAMILY Nucleic acid-binding proteins 1246 1390 IPR012340 -
Viun5g00132 1399 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 754 1001 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun5g00132 1399 CDD OBF_DNA_ligase_I 1246 1389 - -
Viun5g00132 1399 Pfam DNA repair metallo-beta-lactamase 269 374 IPR011084 -
Viun5g00132 1399 MobiDBLite consensus disorder prediction 570 648 - -
Viun5g00132 1399 Gene3D - 48 373 IPR036866 -
Viun5g00132 1399 NCBIfam ATP-dependent DNA ligase 832 1387 IPR000977 GO:0003910|GO:0005524|GO:0071897
Viun5g00132 1399 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1041 1049 IPR016059 GO:0003909
Viun5g00132 1399 Gene3D - 195 351 - -
Viun5g00132 1399 Gene3D DNA ligase/mRNA capping enzyme 1046 1177 - -
Viun5g00132 1399 FunFam DNA ligase 195 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00132 Viun-Chr5 810311 822575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00132 756 1390 Core DNA Replication Machinery Family AT1G08130 38.438 1.41e-158 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00132 - - gmx:100807673 2382.45