Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00127 ATGAATTTCACCAGTAATTCAGCTTCACCAAACATGTTACCCAATTCTGTGTTGAGACCTTCTTGTTCAATGTCTCGGTATCTTCAAGAAGATAGAGAGGTAAGCAATTTCAATCTGCAACCATTGGATTGCAATAACAATTCAGTTCCATCAAATTCCATGTCCATGAACCCTTATATGATGTCTCAATTTCGTCAAGACAGAGAGAGAAGCAGCAGCAGCAATTTAGTTCCATCAAGTTTGCTAACAAATTCCATTCAGAATCCCATTTATCCAATGTTTGAGTACTGTCAACAAGATAGAGAGGCAAACAATTTGATTCTACCATTGGATTTCAATAATAATTTAGCTTCATCGAATATGGTATCAAATTTCATGTCAAATCCCTTTCATTCAATGCCTCAATATAACGAAGAACATAGACAGGGAAGTAACTGCAATCAAGCAATGGATTTCCTTAATAATTCAGTTTCATCAAATTCTATGTTAATGCCCTCTTGTCCTATTCTTCATTATCATCAAGAAAAAGATAGAGAGCGGAGAAACACTTTCCCTCTGCCATTGGATTTCAACAGTAATTCAGCTTCAACAAATGTGTTACCGAATTCCATTTCAATACCCCCATATCCAATGCCTCAATATTATCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGTTGGATATTGAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTTTCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAGAGTACTGTGCAGCCATGTGATGTTGCCAAGGTTATTATGCAGAATAATGCCATGCAATTCCTCACTGAAATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGGAGGAGCGTGCTGCTGGAAACATTGCAGAAGGAATGCATTCAAGCCAAGCTGCCCTGCCTGCTACACCTGCTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGGCTTGGAAGCAGGAAACCAATTGATTCCTCAACCCAACAACATGATCCAGCCTCCCTTTGTTATGCCTTCAGATCAATTGCCTTACAATTTTCATCCCAAGTGA 1221 0.4038 MNFTSNSASPNMLPNSVLRPSCSMSRYLQEDREVSNFNLQPLDCNNNSVPSNSMSMNPYMMSQFRQDRERSSSSNLVPSSLLTNSIQNPIYPMFEYCQQDREANNLILPLDFNNNLASSNMVSNFMSNPFHSMPQYNEEHRQGSNCNQAMDFLNNSVSSNSMLMPSCPILHYHQEKDRERRNTFPLPLDFNSNSASTNVLPNSISIPPYPMPQYYPQNIQEGKLRSFWEKQLLDIEAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNNAMQFLTEIVPDNLQNFCAYGAQEERAAGNIAEGMHSSQAALPATPAFMGNPMNVMNMGRGLEAGNQLIPQPNNMIQPPFVMPSDQLPYNFHPK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00127 406 SUPERFAMILY Histone-fold 232 318 IPR009072 GO:0046982
Viun5g00127 406 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 218 327 - -
Viun5g00127 406 Gene3D Histone, subunit A 213 324 IPR009072 GO:0046982
Viun5g00127 406 FunFam Nuclear transcription factor Y subunit C 212 324 - -
Viun5g00127 406 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 246 308 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00127 Viun-Chr5 773740 777476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00127 188 369 CCAAT-HAP5 Transcription Factor Family AT1G54830 37.766 2.50e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun5g00127 CBFD_NFYB_HMF 1.3e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00127 - K08066 gsj:114370134 177.178