Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00114 ATGAAACCTAAGCCTTGTTTCATCTTCCTTCTGTTGCTCATCTCAACCAATGTTCCAACCTATCTTTGTGAGGACGATGCTCAATACAGCAACTGTAGTAACGCTTTTACATGCGGAAATACGAATCTGGATCTCAGGTACCCCTTCTTCGGAGAAAACAGAGATAGTTATTGCGGTGAAGAGAGGCTCGCATGCGAAAGGGGAGTCCCCAAGATAACCCTCAACGATGCCAAGTACCGTATTCTGGATTGGCATAATACAACACAGACAGTAACAATTGCCAGAGATGATTATTGGGATGGTATCTGTGTGAGTGAGTACAAGAACAACACCTTTGATAACACTCACTTTCGATATGATCATCAATATAATGATCTTGCCAACCTCACGCTCTTTTATTGCCCTTCCAATTCACCCCCCTCTATATCGACGAATCCACTTGGTCCTCTTATTTGTGGTGCTGCTGATAGATATGTCTACTACACTTCCCAGTCTGAACTTTCCTACACGGGGAGTTGCACGGTTGTGGTGATTCCGATATTTGAAACCAACGCTTCACTTGTGATTGACAACAAAATAAGTGAAGCGTTACAGAATGGTTTTGAGTTGAATTGGGTGGGAAATTACGATGACTGCAACAAATGCAGTGATTCTGGTGGTGAGTGTGGGGTTGATGGAGATGGAGGATTCCAATGTTTCTGCAAGGATGGACCCCATTCTGCTACATGCCCAGGAAAAGGAAAAGTATCATTGCGAAAATGGATCTTGATTGTTGTATCTACAACTGTTTCTATGACATTCATCTTTTTGTGCTACTATCTCATAAAAAGAAAACCAAAAAAGATCTTTTTGTGCTCCTATCTGATAAAGAGAAAATCGAAAAAGAGCATTAAGAGTCTTCTAAGAGAAAATTTTGGTAATGAAAGTGTTACTTTAGAGCCCCTACAATTCAACTTGGCTACACTTAAGGCAGCAACCAACAACTTTTCAGATGAGAATAGGATTGGCAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTTCTTGATGGACAACACATAGCAGTAAAAAGGCTCTCAAAAAATTCCTCTCAAGGTGCAAAGGAGTTTAAAAACGAAGTTTCGGTGATAGCTAAACTTCAACATAGAAATCTTGTGACATTCGTTGGTTTTTGTCTCGAAGAGCAAAATAAGATTCTTATATATGAATATGTACCGAACAAGAGTCTTGACTACTTTTTATTTGATTCTCGGCGATCAAAATTGTTAAGTTGGATGGAACGATATGATATTATTAGAGGGATTGCTCGAGGAATTTTTTATTTACATGAGCTTTCTCGGTTCAAAGTTATACATCGCGATCTCAAACCAAGTAATGTTTTATTAGATGAAAATATGGTTCCAAAAATTTCAGATTTTGGACTAGCTAGAATTGTTGAAATAAATCAAGACCAAGTCGGTACTAATAGAATTGTTGGGACATTTGGATATATGCCTCCAGAATATGCAATGCTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTCATGGTTTTAGAGATTATTACTGGGAAAAAGAATTTGAGTTCTCACGAACCACATCTTGTTGCTAAAGGCCTCTTAAGTTATGTATGGAGGCAATGGAGAGATCAAACATGGTTAGACATATTAGATCCTAATATTAAAGAAACTTATTCAGAAATTGAAGTTACTAAATGTATTCAAATTGGTTTGTTATGCGTTCAACAAAATCCTGAAATTAGACCTACAATGACCAATGTTCTATCATACCTTAGTAGTTATTTCAATGATTTACCAAGTCCACAAGAACCAGCATTTTTCTTAAATGAAAGGACGAATCCTGCAACATTTGCTCGGGAATCAAATATTAATCAACCTATCAACAACTCCACTCCATTGTCTATTAATAAAATTTCTGTAAGTGAATTTTTACCTCGATAG 1971 0.3714 MKPKPCFIFLLLLISTNVPTYLCEDDAQYSNCSNAFTCGNTNLDLRYPFFGENRDSYCGEERLACERGVPKITLNDAKYRILDWHNTTQTVTIARDDYWDGICVSEYKNNTFDNTHFRYDHQYNDLANLTLFYCPSNSPPSISTNPLGPLICGAADRYVYYTSQSELSYTGSCTVVVIPIFETNASLVIDNKISEALQNGFELNWVGNYDDCNKCSDSGGECGVDGDGGFQCFCKDGPHSATCPGKGKVSLRKWILIVVSTTVSMTFIFLCYYLIKRKPKKIFLCSYLIKRKSKKSIKSLLRENFGNESVTLEPLQFNLATLKAATNNFSDENRIGKGGFGEVYKGILLDGQHIAVKRLSKNSSQGAKEFKNEVSVIAKLQHRNLVTFVGFCLEEQNKILIYEYVPNKSLDYFLFDSRRSKLLSWMERYDIIRGIARGIFYLHELSRFKVIHRDLKPSNVLLDENMVPKISDFGLARIVEINQDQVGTNRIVGTFGYMPPEYAMLGQFSEKSDVFSFGVMVLEIITGKKNLSSHEPHLVAKGLLSYVWRQWRDQTWLDILDPNIKETYSEIEVTKCIQIGLLCVQQNPEIRPTMTNVLSYLSSYFNDLPSPQEPAFFLNERTNPATFARESNINQPINNSTPLSINKISVSEFLPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00114 656 SUPERFAMILY Protein kinase-like (PK-like) 311 629 IPR011009 -
Viun5g00114 656 CDD STKc_IRAK 335 601 - -
Viun5g00114 656 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 290 404 - -
Viun5g00114 656 Gene3D Transferase(Phosphotransferase) domain 1 405 611 - -
Viun5g00114 656 ProSiteProfiles Protein kinase domain profile. 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00114 656 Pfam Wall-associated receptor kinase C-terminal 163 237 IPR032872 -
Viun5g00114 656 Pfam Protein kinase domain 330 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00114 656 CDD EGF_CA 210 243 - -
Viun5g00114 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Viun5g00114 656 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
Viun5g00114 656 SMART serkin_6 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00114 656 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Viun5g00114 656 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 174 651 - -
Viun5g00114 656 FunFam cysteine-rich receptor-like protein kinase 10 405 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00114 Viun-Chr5 723750 727240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00114 307 656 Receptor kinase-like Gene Family AT4G11530 53.429 1.29e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g00114 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00114 - - var:108321623 1050.81