Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00113 ATGGCTTCCCACACTGTTCACCTCTCTCTTTTCACTGTACTTCATCACTCAGTTATCTTCCTCCTACTCATTCAGATACCTCCATGTTCGAGCTCCAACGATTCTTACAGCAATTGCGCGAACCCGATAAACTGTGGAAAAATAAGAAACATGAGTTTTCCATTCTGGGGAGGGAACCGCCCAAAAGAGTGTGGCCACCCTCTGATGCAACTCATCTGCAAAAACGACACCAGCTACATAACCATTAAGGATGTCCAGTACCAGGTTTTGGAAGCAAACCCAGATAGCCATACTTTGAAAATCACCAGACAAGATTACTGGATAGACTTATGCCAACCAACACATGTCAGCACCACCCTTGACTCTCAGCTCTACGTTTACGAGTCACTCTATAAAAACCTTACCCTTTCATATGATTGTGCTTTGTTTCCCACCTATATTCCTTGTAATGGAGTTCTTGGGGGAACTTCTGTTTATACTCAGTTTGGGTCACTTTCTCCCGAGTCTTGCAAAACAAGTGTGGTTGTTCCCGTTCCTCTATCGTTCATGGAGATTAATAGTTTCATCCAAGTATACCATGCAATCAAAGAAGGGTTTGTGGTGAGATGGATAATAGGTGTTGAAGAATGTGACAAGTGTGAAAAATCAGGTGGAGTATGCGGTTTTGACGGCTCTTCACACCAAACATGTTACTGCAGAGAAGGAGCTTGTCCTAATTTCTCACCAGATACTCAAGCATCTTCAGGAAAAGGAAAAGTATCATTGCGAAAATGGATCTTGATTGTTGTATCTACAACTGTTTCTATGACATTCATCTTTTTGTGCTACTATCTCATAAAAAGAAAACCAAAAAAGATCTTTTTGTGCTCCTATCTGATAAAGAGAAAATCGAAAAAGAGCATTAAGAGTCTTCTAAGAGAAAATTTTGGTAATGAAAGTGTTACTTTAGAGCCCCTACAATTCAACTTGGCTACACTTAAGGCAGCAACCAACAACTTTTCAGATGAGAATAGGATTGGCAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTTCTTGATGGACAACACATAGCAGTAAAAAGGCTCTCAAAAAATTCCTCTCAAGGTGCAAAGGAGTTTAAAAACGAAGTTTCGGTGATAGCTAAACTTCAACATAGAAATCTTGTGACATTCGTTGGTTTTTGTCTCGAAGAGCAAAATAAGATTCTTATATATGAATATGTACCGAACAAGAGTCTTGACTACTTTTTATTTGATTCTCGGCGATCAAAATTGTTAAGTTGGATGGAACGATATGATATTATTAGAGGGATTGCTCGAGGAATTTTTTATTTACATGAGCTTTCTCGACTCAAAGTTATACATCGCGATCTCAAACCAAGTAATGTTTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGGTTAGCTAGAATTGTTGAAATAAATCAAGACCAAGTCGGTACTAATAGAATTGTTGGGACATTTGGATATATGCCTCCAGAATATGCAATGCTTGGACATTTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTTATGATTTTAGAGATTATTACTGGAAAAAAGAATTTGAGTTCTCACGAACCACATCTTGTTGCTAAAGGCCTCTTAAGTTATGTATGGAGGCAATGGAGAGATCAAACATGGTTAGACATATTAGATCCTAATATTAAAGAAACTTATTCAGAAATTGAAGTTACTAAATGTATTCAAATTGGTTTGTTATGCGTTCAACAAAATCCTGAAGTTAGACCTACAATGACCGATGTTCTATCATACCTTAGTAGTTATTTCAATGAATTACCAAGTCCACAAGAACCGGCATTTTTCTTGAATGAAAGCACGAATCCAACAATATTTGCTCGGGAATCAAGTATTAGTCAACCTATCAACAACTCCATTCCATTCTCTATAAATAAGATGTCTGTAAGTGAATTTTTACCTCGACAGTAA 1986 0.3696 MASHTVHLSLFTVLHHSVIFLLLIQIPPCSSSNDSYSNCANPINCGKIRNMSFPFWGGNRPKECGHPLMQLICKNDTSYITIKDVQYQVLEANPDSHTLKITRQDYWIDLCQPTHVSTTLDSQLYVYESLYKNLTLSYDCALFPTYIPCNGVLGGTSVYTQFGSLSPESCKTSVVVPVPLSFMEINSFIQVYHAIKEGFVVRWIIGVEECDKCEKSGGVCGFDGSSHQTCYCREGACPNFSPDTQASSGKGKVSLRKWILIVVSTTVSMTFIFLCYYLIKRKPKKIFLCSYLIKRKSKKSIKSLLRENFGNESVTLEPLQFNLATLKAATNNFSDENRIGKGGFGEVYKGILLDGQHIAVKRLSKNSSQGAKEFKNEVSVIAKLQHRNLVTFVGFCLEEQNKILIYEYVPNKSLDYFLFDSRRSKLLSWMERYDIIRGIARGIFYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQVGTNRIVGTFGYMPPEYAMLGHFSEKSDVFSFGVMILEIITGKKNLSSHEPHLVAKGLLSYVWRQWRDQTWLDILDPNIKETYSEIEVTKCIQIGLLCVQQNPEVRPTMTDVLSYLSSYFNELPSPQEPAFFLNESTNPTIFARESSISQPINNSIPFSINKMSVSEFLPRQ 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00113 661 SMART serkin_6 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00113 661 ProSiteProfiles Protein kinase domain profile. 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00113 661 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
Viun5g00113 661 Gene3D Transferase(Phosphotransferase) domain 1 409 616 - -
Viun5g00113 661 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Viun5g00113 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Viun5g00113 661 Pfam Protein kinase domain 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00113 661 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 648 - -
Viun5g00113 661 FunFam cysteine-rich receptor-like protein kinase 10 409 612 - -
Viun5g00113 661 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 294 408 - -
Viun5g00113 661 SUPERFAMILY Protein kinase-like (PK-like) 315 634 IPR011009 -
Viun5g00113 661 CDD STKc_IRAK 339 605 - -
Viun5g00113 661 Pfam Wall-associated receptor kinase C-terminal 166 234 IPR032872 -
Viun5g00113 661 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00113 Viun-Chr5 715233 720969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00113 311 660 Receptor kinase-like Gene Family AT4G11530 53.714 6.75e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g00113 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00113 - - var:108321623 1025