LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g00112	ATGAAACCTAAGCCTTGCTTCGTCTTCGTCGTGTTGCTCATCTCAACCAATGTTCCAACCTATCTTTGTGAGGACGATGCTCAATACAGCAACTGTAGTAACGCTTTTACATGCGGAAATACGAATCTGGATCTCAGGTACCCCTTCTTCGGAGAAAACAGAGATAGTTATTGCGGTGAAGAGAGGCTCGCATGCGAAAGGGGAGTCCCCAAGATAACCCTCAACGATGCCAAGTACCGTATTCTGGATTGGCATAATACAACACAGACAGTAACAATTGCCAGAGATGATTATTGGGATGGTATCTGTGTGAGTGAGTACAAGAACAACACCTTTGATAACACTCACTTTCGATATGATCATCAATATAATGATCTTGCCAACCTCACGCTCTTTTATTGCCCTTCCAATTCACCCCCCTCTATATCGACGAATCCACTTGGTCCTCTTATTTGTGGTGCTGCTGATAGATATGTCTACTACACTTCCCAGTCTGAACTTTCCTACACGGGGAGTTGCACGGTTGTGGTGATTCCGATATTTGAAACCAACGCTTCACTTGTGATTGACAACAAAATAAGTGAAGCGTTACAGAATGGTTTTGAGTTGAATTGGGTGGGAAATTACGATGACTGCAACAAATGCAGTGATTCTGGTGGTGAGTGTGGGGTTGATGGAGATGGAGGATTCCAATGTTTCTGCAAGGATGGACCCCATTCTGCTACATGCACAGGTATGTCTGTATTTCCATTTCTATGCAGTTCTCCGTTTCATTGTGCAAATCTCAAAAACCTGAGTTATCCTTTCTGGGGATATGGTAGACCCCCATATTGTGGCCACCCTGCGTTTAACCTTCAATGTACAGGTGAAGTAGCAACGCTTACCCTGATGTCGGAGACTTATAGAGTTCTTGAAGTCAATGATTCGGATCATAGATTCAAACTTGTAAGAACTGACTACTGGAATAACATCTGTCCAACTATCCTCAGGAACATCACTGTAGATGGCACTTTCCTTAATTATGGCTCAGATTCTCAGAACCTCTATTTCTACTATGATTGTCCTTCATTTCCTCAATCAGATACCGTTTTCCCTTGGTTTAACTGTAGCGTAAATGGAACTCAAATGATTAACTATTTTGTGACGGAGGGCATGCTTGAGAATTCTGAGTCAGGTGAAATCATGGCAGCATGCAAATCTAGAGTAGTTGTTCCGATTTTGGAGTCAGAAGCTAAACTTCTAGAAAGAAACTCAACGACGGAAAATCTTAAGGCTGTTCTTGATAATGGTTTTGACGCGGAGTGGGATGCAAACAATAGTTTGTGTGAGAAATGCCAAAACTCTGGTGGGTACTGTGGTTATAATCCAAGCTCGGGTGAATTTTCTTGCTATTGCAGCAATGGTTCTTCTCCATCCACATGTAAAAATTCAGGTGAAGTTCATAGGACTGCCACCACCGACGAACGATAAACCATGTTGTCCCTGTCGTCGACCACTACCACCACCACCATTGTAGTCATCACCCTCATCTTCTCTCTCCACCACACGACGTCGTTGCCACCCGATGCACCACTCTCCACCTGCCAAGTCACCTCCTTCAACTGCGGCACCATCACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTCCTTCTGTGGGCCACCACAGTTCCATTTGAACTGCCAAGACGGTGTCGTCCCCGAGTTGAACATCTCATCAGTCAGCTACCGAGTCATTAGTATCAACTCGGTGGCTCAGACCCTCACCTTGGCAAGATTAGACCTTTGGAACGAGACATGCACGCATGTTTACGTGAACTCAACTTTTGATGACCCCATCTTCAGCTATGGTTCCGGGAACCAAAACCTGACCTTGTTTTATGAGTGCAAACCCACCTCAGCGTTCCCCAAAACACCAGAAAATCTGTTTCACTGTGAGAGTAAAGGGGTTTTGAATGAGTCTTATTCTTTGGTTGGTTCGTTACCTTCGGACCCTATTGCAGTTCCAATTGTTGAATGCGTTCAACATATTGCAGTTCCAATTCTGAAAGAGCAGGCTGATAGACTGGTGGAAAACCGGTCTTTGCTTGGGGAGATTCTGATGAAGGGGTTTAATGTGAACTATTGGAATCCTTTTGAGAGTGTGTGCGTTGAGTGTGTTGGTTCTGGTGGCCACTGTGGCTTTGATTCTGATAAGAACCAACCTATTTGTATTTGTGGGGATCAATTGTGTTCAACTCCAGGTAAACGCAACAATGTAGGTGTAGCAATAGGCGCTACTGTAGGAGGAGTTGCAGCCCTTGTTGTCATTCTTGGATGTGTGTACTGTATGGTACAAAGAAGAAGAAAAACTTATCAAAAATCAAGAAGTATGGAGCTCTTCATAGCTCCAACTTCAAGCGGAGACACTTTTGCATCCACTACTATCACCTCTCAAAGTCTATCTTCTTACCAATCTTCCAAGACTGATCCAGTGGCCAGGAGTTACTACTTTGGTGTCCAGGTCTTCACCTATGAGGAACTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGCACAGTTGCAGTGAAACGCCATTATGAAAGCAACTCTAGGCGTATTATGCAGTTCATGAATGAAGTTCAGATTCTAGCACGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTATCCTTGTCTATGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAGGCTCAAAATCAACTCTACTCCCTTGGCCTGTAAGATTGAACATTGCTGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAATGATGTCATACACCGCGATGTTAAAACCAACAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTCAAGGGATTTCCCAAATGATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTACCAGTGCTACCAACTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGATTGAGCTCATATCATCACTACAAGCTGTGGACATCAACAGGAATCGCAGTGATGTGAACTTGTCAAACATGGCTATCAAAAAAATTCAAAACCAGGAACTGCATGAGTTGGTTGATCCTTATCTTGGGTTTGAGAAGGATCATGGTATAAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAACAGGAAAGAGATATGAGACCATGCATGGATGAAGTGGTAGAGATCTTAAGAGGAATCAAAAGTGATGGGGTTGGTGCACGGGAAGAGACAGAAACATTGGATATTAGGACTGATGAAGTTATACTTTTGAAGAAGGCTCATTCCCCTGTTTCACCAAATTCAGTTGTTGACAATTGGATCAGTGGCTCCTCTGTATCTAATTCCTCATAG	3528	0.4382	MKPKPCFVFVVLLISTNVPTYLCEDDAQYSNCSNAFTCGNTNLDLRYPFFGENRDSYCGEERLACERGVPKITLNDAKYRILDWHNTTQTVTIARDDYWDGICVSEYKNNTFDNTHFRYDHQYNDLANLTLFYCPSNSPPSISTNPLGPLICGAADRYVYYTSQSELSYTGSCTVVVIPIFETNASLVIDNKISEALQNGFELNWVGNYDDCNKCSDSGGECGVDGDGGFQCFCKDGPHSATCTGMSVFPFLCSSPFHCANLKNLSYPFWGYGRPPYCGHPAFNLQCTGEVATLTLMSETYRVLEVNDSDHRFKLVRTDYWNNICPTILRNITVDGTFLNYGSDSQNLYFYYDCPSFPQSDTVFPWFNCSVNGTQMINYFVTEGMLENSESGEIMAACKSRVVVPILESEAKLLERNSTTENLKAVLDNGFDAEWDANNSLCEKCQNSGGYCGYNPSSGEFSCYCSNGSSPSTCKNSGEVHRTATTDERXTMLSLSSTTTTTTIVVITLIFSLHHTTSLPPDAPLSTCQVTSFNCGTITNLSYPFTGGDRPSFCGPPQFHLNCQDGVVPELNISSVSYRVISINSVAQTLTLARLDLWNETCTHVYVNSTFDDPIFSYGSGNQNLTLFYECKPTSAFPKTPENLFHCESKGVLNESYSLVGSLPSDPIAVPIVECVQHIAVPILKEQADRLVENRSLLGEILMKGFNVNYWNPFESVCVECVGSGGHCGFDSDKNQPICICGDQLCSTPGKRNNVGVAIGATVGGVAALVVILGCVYCMVQRRRKTYQKSRSMELFIAPTSSGDTFASTTITSQSLSSYQSSKTDPVARSYYFGVQVFTYEELEEATKNFDASRELGEGGFGTVYKGELKDGRTVAVKRHYESNSRRIMQFMNEVQILARLRHKNLVTLFGCTSKHSRELILVYEFIPNGTVAYHLQGRGSKSTLLPWPVRLNIAVETAEALAYLHANDVIHRDVKTNNILLDDQFCVKVADFGLSRDFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLIELISSLQAVDINRNRSDVNLSNMAIKKIQNQELHELVDPYLGFEKDHGIRRMTTAVAELAFRCLQQERDMRPCMDEVVEILRGIKSDGVGAREETETLDIRTDEVILLKKAHSPVSPNSVVDNWISGSSVSNSS	1175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g00112	1175	SUPERFAMILY	Protein kinase-like (PK-like)	827	1125	IPR011009	-
	Viun5g00112	1175	Gene3D	Phosphorylase Kinase; domain 1	821	926	-	-
	Viun5g00112	1175	ProSiteProfiles	Protein kinase domain profile.	850	1125	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g00112	1175	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	7	245	IPR044652	GO:0004672
	Viun5g00112	1175	FunFam	Wall-associated receptor kinase-like 20	927	1135	-	-
	Viun5g00112	1175	SMART	serkin_6	850	1121	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g00112	1175	Gene3D	Transferase(Phosphotransferase) domain 1	927	1133	-	-
	Viun5g00112	1175	ProSiteProfiles	EGF-like domain profile.	438	475	IPR000742	-
	Viun5g00112	1175	ProSiteProfiles	EGF-like domain profile.	208	244	IPR000742	-
	Viun5g00112	1175	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	825	926	-	-
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase galacturonan-binding	253	316	IPR025287	GO:0030247
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase galacturonan-binding	528	593	IPR025287	GO:0030247
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase galacturonan-binding	32	95	IPR025287	GO:0030247
	Viun5g00112	1175	Pfam	Protein tyrosine and serine/threonine kinase	853	1122	IPR001245	GO:0004672\|GO:0006468
	Viun5g00112	1175	ProSitePatterns	Protein kinases ATP-binding region signature.	856	878	IPR017441	GO:0005524
	Viun5g00112	1175	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	970	982	IPR008271	GO:0004672\|GO:0006468
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase C-terminal	163	237	IPR032872	-
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase C-terminal	668	744	IPR032872	-
	Viun5g00112	1175	Pfam	Wall-associated receptor kinase C-terminal	374	467	IPR032872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g00112	Viun-Chr5	703270	709961	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g00112	533	1175	Receptor kinase-like Gene Family	AT1G25390	42.279	8.18e-147	454

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Viun5g00112		PK_Tyr_Ser-Thr	2.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g00112	-		-	cam:101490779	1392.48