Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00105 ATGGCTGAAGTTGAATACCATGCAAAATCCACCACTAATACCCCACCCCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCAGAAGATCAAACTCATGATCATGAAGCAGGTTCCGATTCTGAGCCTTTCATCGCAAGAAAATACGAGTGTCAGTACTGCTTCAGAGAATTCGCAAACTCACAAGCACTTGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAGCGTGCTCAAATGCAAGCTGCTCACGGGTTTGTGGCTTCCCACGTTCACAACACCATCATATCAACCTTCTCACCACAGTCTCAGCCACCGTTATCGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCGGGAGTGGCTTTTGTGACTCCAGGAAGACGAGTCTATGCCACAGCCGGTGCCTCCATCACTGGTGGCCTTGGCCACCGCAACCGCAATCCTCCGCCGGAGATCGGTGGCTTCAACAGCCACAGTTTCAACGGTGGTGGTGGTTTGGATTTGCATCTTAGCCTATGA 546 0.5092 MAEVEYHAKSTTNTPPLKLFGININKSPEDQTHDHEAGSDSEPFIARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAAHGFVASHVHNTIISTFSPQSQPPLSWLCTPHAWSGGGAYDSGVAFVTPGRRVYATAGASITGGLGHRNRNPPPEIGGFNSHSFNGGGGLDLHLSL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00105 181 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
Viun5g00105 181 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Viun5g00105 181 Gene3D Classic Zinc Finger 29 98 - -
Viun5g00105 181 PANTHER ZINC FINGER PROTEIN 5 7 181 IPR044299 GO:0010090
Viun5g00105 181 MobiDBLite consensus disorder prediction 147 167 - -
Viun5g00105 181 MobiDBLite consensus disorder prediction 17 41 - -
Viun5g00105 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00105 Viun-Chr5 657923 658859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00105 12 181 C2H2 Transcription Factor Family AT1G67030 41.089 8.45e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g00105 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00105 - - gmx:100527555 270.011