Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00099 ATGAGTGTTCGGTCGAAAAACTTGAGCTCAGTATTCTATGCAGATTCGTACCATCCCATTCAAGTTGGCAGTATCGACGGCACCGATGTTGTTCCTCACGACAATGCCGTTTATCGTGCTCAATTATGTTCCTCTATTGGCCTCTATGACCCACTTGGTGATCCTAAGGCCACTGGAGACCCTTATTGCACTCTCTTCGTCGCTCGTCTCTCTCGCCTCACCACACAGGATACTCTCCACAAAGTTATGAGTAAATATGGCCAGGTGAAGAATTTGCGCTTGGTCAGGGACATTGTGACAGGAGCATCTCGTGGTTATGCTTTTGTTGAATATGAAACTGAAAGGGAGATGCGACGTGCATATATGGATGCTCATCATTTGATTGTTGATGATTGTGAAATCATAGTTGATTACAACAGACAACAATTGATGCCTGGATGGATTCCTAGAAGGTTAGGTGGTGGTCTCAGTGGTAAGAAGGAATCAGGGCAACTTCGTTTTGGGGGAAGAGAAAAACCATTTCGTGCACCCTTGAAACCAATCCCATATGAGGAGTTGAAGAAGCTTGGCATACCCCATCCGCCAGAAGGAAGATACATGTCACGCTTTCAGGATTGTTTGGTAAATTGTTTTTGCTTTCGTCAATGCTTGTAA 654 0.4465 MSVRSKNLSSVFYADSYHPIQVGSIDGTDVVPHDNAVYRAQLCSSIGLYDPLGDPKATGDPYCTLFVARLSRLTTQDTLHKVMSKYGQVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKPIPYEELKKLGIPHPPEGRYMSRFQDCLVNCFCFRQCL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00099 217 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
Viun5g00099 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Viun5g00099 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Viun5g00099 217 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 204 - -
Viun5g00099 217 SMART rrm1_1 64 137 IPR000504 GO:0003723
Viun5g00099 217 SUPERFAMILY RNA-binding domain, RBD 50 169 IPR035979 GO:0003676
Viun5g00099 217 Gene3D - 50 171 IPR012677 -
Viun5g00099 217 CDD RRM_snRNP35 59 152 IPR034146 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00099 Viun-Chr5 621950 625069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00099 64 136 Eukaryotic Initiation Factors Gene Family AT2G23350 31.507 2.86e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00099 K13155 - gmx:100814109 389.808