Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00088 ATGAATGGTTGGTGGAAAGTAATGGAAGAGTGGAAGCCTAGCTTTGTGATGGTGTTGGTGCAGTTTGCATACGCTGCAACCAGTGTTCTTGCAAAGCTCGCCGCCCACGACGGAATGAGCATGCGAGTTCTTACTGCATACCGTCTCATCTTCGGAGCTGCTTTCTCACTTTCTCTTGCTCTTATTTTCGAAAGAAAGAACAGGCCAAAGTTGACATGGCGGGTGCTTTGGATGTCCTTCTTCTGCGGTCTATTTGGGGGGAGTCTATTCCAGAACCTTTTCATGGTTTCATTGACTTTGGTGTCAGCAACATATGCATACGCTGTTTTTAATATGGTTCCTGCCGTCACTTTTATTCTCTCCTTCTTCTGCGGCTACGAAGAGTTAAATGTGCGTAGTACAGGAGGACAGAGTAAGGTGTTGGGAACGATACTAGGAATTACAGGGACAATGTTGTTGTCTTTTTTTAAAGGGACAAAGATTAATGTATGGAACCTTGACGTTAATCTTTTGCATGCAAATCACACAACATCGCGTGCTCACTCCAAAGCTGAATGGGTAGGTATTCTCAGTGGCATGGGAAGTTGCTTAAGTTTTTCAATCTGGCTCATCATTCAGGTTAAGGTGAGTAAGCAATATCCCAGGCATCACTCAGGTTCAGCGTTGATGAACTTAATGGGTGCACTACAAGCCACGGCTCTTGCCCTTTGTGTTGATAAAGATCGGAGTCAATGGAAGTTGGGTTTGGATATTAGGCTTCTCACAGCACTTTTTACGGGAATTGTGAGCTCTGGATTTGCTATTATTGCGACTGCATGGTGTGTACGAAAAAGAGGTCCATTATATGCATCAGTTTTCAACCCCCTATGCCTTGTGCTCGTGGCTATTGCTGCTTCTCTGTTATTGCAAGAACAGCTATACCTTGGAAGTGTAATTGGAGGAGTGCTTATTGTGTGTGGTCTGTACATGGTGTTGTGGGGGAAGAGCAAAGACATGAAAACGGTAACTCCATTTGTGTCATCAGAGAACACTGAAGAATTTGTTGTCTCCGAGGTTGTTGTCGTGTCTAAGACAGAGAATAGTGAGAGCAACGTTGTAATAACAAAGGCTCGTGATGAATCTCTGGAAGGTAGATAG 1137 0.4415 MNGWWKVMEEWKPSFVMVLVQFAYAATSVLAKLAAHDGMSMRVLTAYRLIFGAAFSLSLALIFERKNRPKLTWRVLWMSFFCGLFGGSLFQNLFMVSLTLVSATYAYAVFNMVPAVTFILSFFCGYEELNVRSTGGQSKVLGTILGITGTMLLSFFKGTKINVWNLDVNLLHANHTTSRAHSKAEWVGILSGMGSCLSFSIWLIIQVKVSKQYPRHHSGSALMNLMGALQATALALCVDKDRSQWKLGLDIRLLTALFTGIVSSGFAIIATAWCVRKRGPLYASVFNPLCLVLVAIAASLLLQEQLYLGSVIGGVLIVCGLYMVLWGKSKDMKTVTPFVSSENTEEFVVSEVVVVSKTENSESNVVITKARDESLEGR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00088 378 PANTHER WAT1-RELATED PROTEIN 13 340 IPR030184 GO:0016020|GO:0022857
Viun5g00088 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
Viun5g00088 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Viun5g00088 378 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020
Viun5g00088 378 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00088 Viun-Chr5 552141 554204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00088 12 345 Nodulin-like Gene Family AT1G25270 39.403 3.85e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00088 - - gmx:100815160 489.574