Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00084 ATGCGGATGAGCTGCAATGGGTGTCGAGTCCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCCTGTTTACAGTGGATCAAAAGCCCAGAATCCCAAGCCAATGCTACTGTGTTTCTCGCAAAGTTCTACGGTCGTGCTGGGCTCATGAATCTCGTTAACGCAGGCCCAGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTCTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAAACGTCTTGAAAGGCGCGCCGATCACACCGATCACGTCTGAAGCGGCGGCTAGCGGGCGGGGCCCACCCCTCAAGGCATACGACATACGCCACGTGTCGAGAGATGAGAACTCCGCCGCGTCGAACGAAACTCAGCAGCAGCGAGTCAAGACTCGGTCTCGGGTCCGGCGTCCGGTTGTCAACGCCAAGCCCATATCCACCACCAACGAAAACAACGGTAGCAAGGGAACCGAATTGGGTTCTTCTGAACCGGGTTTGATGACATGCGAGTGGACCGAAGAGGCGTTGAATCGGTCTGGAAGTCACGAATCGTCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCCAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGAAGGATCGAGTTGAAGGATTTTAGCGGCTCGGCCGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCGGCTTGA 903 0.5604 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRSRVRRPVVNAKPISTTNENNGSKGTELGSSEPGLMTCEWTEEALNRSGSHESSLSHQSEAANAVESESMVSVETAETSILFRDEPDSNPKIVQRTDDVGLELTLGFEPVSRAQHVVPVKKRRIELKDFSGSAESGSCKMELGLECSA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00084 300 MobiDBLite consensus disorder prediction 195 222 - -
Viun5g00084 300 PIRSF AS2 1 300 IPR017414 -
Viun5g00084 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Viun5g00084 300 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Viun5g00084 300 MobiDBLite consensus disorder prediction 163 182 - -
Viun5g00084 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 257 - -
Viun5g00084 300 MobiDBLite consensus disorder prediction 134 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00084 Viun-Chr5 506189 507758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00084 1 296 AS2 family AT3G02550 57.718 3.81e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun5g00084 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00084 - - gmx:100807854 531.946