Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00027 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAGGAGGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTGTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGGCGTTTGAAAACCGACACTCATACCGCAAAGAACCCAAGATCAAGGGATAATGTTATTTTGAGAGAAGTGGATGAACGGTTGAAGGTTGAAGCCGAGAAAAATTCTTCTGGAGATACTGATTCAAGTGAAGAAGTTCCTACCAAATCGTCAGAATACATGCCAAGGGATGAAATCACTGAGGTGATTGAACAAGACGCTAGCAGATTTGAAGATACTTATTCAAAAGAAGTGTCTTCAAAAGGAGGCAAAGAAAATAATTTCCATGAACTTGTGGAGGAAAAAAAATGGGGGAAAAAGCCTGTCAAGGATGCAAAGGTGCAAAGCAGAAGTTCCAGCATACACACGCGTAGACATTCGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACAGCAGCAGGAACAAAAGTAGCAATCTTGCCCTGCAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTTCAAGCCGTAGTTTCCATTCTAAATGGGTATATAAAGCGTTTTCCAAAAGATGAGGATTTTCGGTCTACATTGCATCACAGATGTTTCTCTTCCTTGAATTTTGTTGAACTGAAAGAAGAGAAAATTACTCAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAGGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTAAGTATCATTACAGGTTTGAGTTTAAATGATTTGAAATACGAGTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCCTTTCAGGCACGGACGATGTTGTTGCCTGAACTGTGGAAACATCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGTTCTAGTAGACACACCAAACAAAACAAGAAGGCTAAAACTTCTTCAAGAAGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTGCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAACAGTTCCTTCAATTGGCATTCCATCAGTTTCTGTCTCAGGAAGTGAAGAGGGAGGTTCACTTGGTCATTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGACCAGGAGTTTACCAAGTAAAAGATGTTGAGGATGATGGTAACCAAGACAACTGCGTGAAAGGCTCTTACGGTTCAACATTTGTTAAACAGACATTAACATATGAATCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAACCTCAGAAAGGAAATTCAATGGCAGCTACAGAAGAATGGAGGAAAAGGAATGTCAGTGATGAAATTAATAACTCTTTCCCTATGCAAACTAATTTAAACAATCGCATTGTTGATGCTGTACCATATGAAAAAGCAAATGAACTTGGTCTTAAAAAGCCAAATAAGACAAGTTATGCTCTTCAAGGATCAGATTTTCCAAGCACTCCACGGGAATTTATCTGTTCTCTTACTGGAAATCTCTTTGAGGAACCGGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCTGTAACAGGAATTGCTTTGGAATGCATGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTATCTTCTTGGTCTTGCTTCCCAAAGAGTGGAGAACTCAGAGGATCTCAAGTTGAAAGAAGGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTTTGAAAGCAGAAGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTCTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAGTCACAAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAAGTGTCTTCTTGAGCTTCTTCACAGCACGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTATTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACATCATTCATAAGTGGCTTGGCGGGTGAAAAAGTAGTTACTATAATGCATATTCTGCTCATGTACCTCGAGAATTCTTCTCCATTTGAAAAGCCCCTGATTGCTGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCGCAAAGGTTTAGCGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGGCAGCTTAAACGATGAAAAGGCCCGAGAAAAGTGTTGCAGAGCACTTCTAATCTTGTGTGGCCATTTTTCTTCTACCGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATCATGATGAACGACTCAACATTTCATTGGAAGATGAAGAGAAAAGGGTTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCTTATCCAGATGTTTAGATTGTAAGCACATAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGCTCTTCACTATCTACACTATTTGGTGCTGGATTGCCTCTTCCGTCCTTCTCATTCATCATCTCTCAGTTGAAACGAATCTTGGAAAATGGAGAACTTGAGCTCAGGGCTCTGGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATGTTGCCCCCCTTTTTCATGGACTTGCTGAGATAACATGCACTGCAAAACAACTGCATGCCACTGTTTCTAGAGAGAATTTGTAG 3240 0.4 MASSLEELLAEEGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLCVSSERIRPQRQKSDASRYQITSGRLKTDTHTAKNPRSRDNVILREVDERLKVEAEKNSSGDTDSSEEVPTKSSEYMPRDEITEVIEQDASRFEDTYSKEVSSKGGKENNFHELVEEKKWGKKPVKDAKVQSRSSSIHTRRHSSETGKKINPQKSFEYSSRNKSSNLALQVASSLALDEVAVQAVVSILNGYIKRFPKDEDFRSTLHHRCFSSLNFVELKEEKITQTKVIRSLEQAIEAIEQSVEEPVSAMYLKRTTMQLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTMLLPELWKHLFSPQLSHLKAWYKKEEGVLVDTPNKTRRLKLLQEVYNEHLDSGTHIFAVYYKDWLTEGVESPTVPSIGIPSVSVSGSEEGGSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRPGVYQVKDVEDDGNQDNCVKGSYGSTFVKQTLTYESETVKFTDQDIEGFSQGVAIDTIKPQKGNSMAATEEWRKRNVSDEINNSFPMQTNLNNRIVDAVPYEKANELGLKKPNKTSYALQGSDFPSTPREFICSLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGIALECMAIPFTNLILKRLIDNWRSERFDYLLGLASQRVENSEDLKLKEGDEAAVFKLESLFSSLKAEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRKCLLELLHSTEVTPTTNAILFLIELLSMKRRKDVTSFISGLAGEKVVTIMHILLMYLENSSPFEKPLIAVLLLHFDLLVEPQRFSAYREVAVNAIAEALDGSLNDEKAREKCCRALLILCGHFSSTGKIPTKTSILKQAGYNHDERLNISLEDEEKRVEELLKKLLESLIGDGEGPFLKSLSRCLDCKHIDLVRACLITVTWLSSSLSTLFGAGLPLPSFSFIISQLKRILENGELELRALASLSLLNFSKISECKTLLKTMAEDVAPLFHGLAEITCTAKQLHATVSRENL 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00027 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 692 IPR013083 -
Viun5g00027 1079 MobiDBLite consensus disorder prediction 142 201 - -
Viun5g00027 1079 SUPERFAMILY ARM repeat 734 1045 IPR016024 -
Viun5g00027 1079 Gene3D - 708 1063 IPR011989 -
Viun5g00027 1079 MobiDBLite consensus disorder prediction 73 106 - -
Viun5g00027 1079 CDD RING-Ubox_PUB 619 667 IPR045210 -
Viun5g00027 1079 MobiDBLite consensus disorder prediction 142 172 - -
Viun5g00027 1079 PANTHER OS04G0584500 PROTEIN 607 1077 - -
Viun5g00027 1079 MobiDBLite consensus disorder prediction 57 72 - -
Viun5g00027 1079 Pfam U-box domain 619 688 IPR003613 GO:0004842|GO:0016567
Viun5g00027 1079 ProSiteProfiles Zinc finger SWIM-type profile. 303 341 IPR007527 GO:0008270
Viun5g00027 1079 ProSiteProfiles U-box domain profile. 617 692 IPR003613 GO:0004842|GO:0016567
Viun5g00027 1079 MobiDBLite consensus disorder prediction 47 120 - -
Viun5g00027 1079 SUPERFAMILY RING/U-box 614 688 - -
Viun5g00027 1079 Coils Coil 931 955 - -
Viun5g00027 1079 SMART Ubox_2 621 685 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00027 Viun-Chr5 167262 174345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00027 611 769 U-box Gene Family AT1G71020 28.977 8.00e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00027 - - vra:106758533 1745.71