Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00026 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAGGAGGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTGTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGGCGTTTGAAAACCGACACTCATACCGCAAAGAACCCAAGATCAAGGGATAATGTTATTTTGAGAGAAGTGGATGAACGGTTGAAGGTTGAAGCCGAGAAAAATTCTTCTGGAGATACTGATTCAAGTGAAGAAGTTCCTACCAAATCGTCAGAATACATGCCAAGGGATGAAATCACTGAGGTGATTGAACAAGACGCTAGCAGATTTGAAGATACTTATTCAAAAGAAGTGTCTTCAAAAGGAGGCAAAGAAAATAATTTCCATGAACTTGTGGAGGAAAAAAAATGGGGGAAAAAGCCTGTCAAGGATGCAAAGGTGCAAAGCAGAAGTTCCAGCATACACACGCGTAGACATTCGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACAGCAGCAGGAACAAAAGTAGCAATCTTGCCCTGCAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTTCAAGCCGTAGTTTCCATTCTAAATGGGTATATAAAGCGTTTTCCAAAAGATGAGGATTTTCGGTCTACATTGCATCACAGATGTTTCTCTTCCTTGAATTTTGTTGAACTGAAAGAAGAGAAAATTACTCAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAGGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTAAGTATCATTACAGGTTTGAGTTTAAATGATTTGAAATACGAGTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCCTTTCAGGCACGGACGATGTTGTTGCCTGAACTGTGGAAACATCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGTTCTAGTAGACACACCAAACAAAACAAGAAGGCTAAAACTTCTTCAAGAAGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTGCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAACAGTTCCTTCAATTGGCATTCCATCAGTTTCTGTCTCAGGAAGTGAAGAGGGAGGTTCACTTGGTCATTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGACCAGGAGTTTACCAAGTAAAAGATGTTGAGGATGATGGTAACCAAGACAACTGCGTGAAAGGCTCTTACGGTTCAACATTTGTTAAACAGACATTAACATATGAATCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAACCTAAAGGAAATTCAATGGCAGCTACAGAAGAATGGAGGAAAAGGAATGTCAGTGATGAAATTAATAACTCTTTCCCTATGCAAACTAATTTAAACAATCGCATTGTTGATGCTGTACCATATGAAAAAGCAAATGAACTTGGTCTTAAAAAGCCAAATAAGACAAGTTATGCTCTTCAAGGATCAGATTTTCCAAGCACTCCACGGGAATTTATCTGTTCTCTTACTGGAAATCTCTTTGAGGAACCGGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCTGTAACAGGAATTGCTTTGGAATGCATGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTATCTTCTTGGTCTTGCTTCCCAAAGAGTGGAGAACTCAGAGGATCTCAAGTTGAAAGAAGGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTTTGAAAGCAGAAGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTCTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAGTCACAAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAAGTGTCTTCTTGAGCTTCTTCACAGCACGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTATTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACATCATTCATAAGTGGCTTGGCGGGTGAAAAAGTAGTTACTATAATGCATATTCTGCTCATGTACCTCGAGAATTCTTCTCCATTTGAAAAGCCCCTGATTGCTGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCGCAAAGGTTTAGCGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGGCAGCTTAAACGATGAAAAGGCCCGAGAAAAGTGTTGCAGAGCACTTCTAATCTTGTGTGGCCATTTTTCTTCTACCGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATCATGATGAACGACTCAACATTTCATTGGAAGATGAAGAGAAAAGGGTTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCTTATCCAGATGTTTAGATTGTAAGCACATAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGCTCTTCACTATCTACACTATTTGGTGCTGGATTGCCTCTTCCGTCCTTCTCATTCATCATCTCTCAGTTGAAACGAATCTTGGAAAATGGAGAACTTGAGCTCAGGGCTCTGGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATGTTGCCCCCCTTTTTCATGGACTTGCTGAGATAACATGCACTGCAAAACAACTGCATGCCACTGTTTCTAGAGAGAATTTGTAG 3237 0.3998 MASSLEELLAEEGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLCVSSERIRPQRQKSDASRYQITSGRLKTDTHTAKNPRSRDNVILREVDERLKVEAEKNSSGDTDSSEEVPTKSSEYMPRDEITEVIEQDASRFEDTYSKEVSSKGGKENNFHELVEEKKWGKKPVKDAKVQSRSSSIHTRRHSSETGKKINPQKSFEYSSRNKSSNLALQVASSLALDEVAVQAVVSILNGYIKRFPKDEDFRSTLHHRCFSSLNFVELKEEKITQTKVIRSLEQAIEAIEQSVEEPVSAMYLKRTTMQLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTMLLPELWKHLFSPQLSHLKAWYKKEEGVLVDTPNKTRRLKLLQEVYNEHLDSGTHIFAVYYKDWLTEGVESPTVPSIGIPSVSVSGSEEGGSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRPGVYQVKDVEDDGNQDNCVKGSYGSTFVKQTLTYESETVKFTDQDIEGFSQGVAIDTIKPKGNSMAATEEWRKRNVSDEINNSFPMQTNLNNRIVDAVPYEKANELGLKKPNKTSYALQGSDFPSTPREFICSLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGIALECMAIPFTNLILKRLIDNWRSERFDYLLGLASQRVENSEDLKLKEGDEAAVFKLESLFSSLKAEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRKCLLELLHSTEVTPTTNAILFLIELLSMKRRKDVTSFISGLAGEKVVTIMHILLMYLENSSPFEKPLIAVLLLHFDLLVEPQRFSAYREVAVNAIAEALDGSLNDEKAREKCCRALLILCGHFSSTGKIPTKTSILKQAGYNHDERLNISLEDEEKRVEELLKKLLESLIGDGEGPFLKSLSRCLDCKHIDLVRACLITVTWLSSSLSTLFGAGLPLPSFSFIISQLKRILENGELELRALASLSLLNFSKISECKTLLKTMAEDVAPLFHGLAEITCTAKQLHATVSRENL 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00026 1078 ProSiteProfiles U-box domain profile. 616 691 IPR003613 GO:0004842|GO:0016567
Viun5g00026 1078 Gene3D - 702 1062 IPR011989 -
Viun5g00026 1078 CDD RING-Ubox_PUB 618 666 IPR045210 -
Viun5g00026 1078 MobiDBLite consensus disorder prediction 142 201 - -
Viun5g00026 1078 PANTHER OS04G0584500 PROTEIN 606 1076 - -
Viun5g00026 1078 MobiDBLite consensus disorder prediction 73 106 - -
Viun5g00026 1078 MobiDBLite consensus disorder prediction 142 172 - -
Viun5g00026 1078 Coils Coil 930 954 - -
Viun5g00026 1078 MobiDBLite consensus disorder prediction 57 72 - -
Viun5g00026 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 691 IPR013083 -
Viun5g00026 1078 ProSiteProfiles Zinc finger SWIM-type profile. 303 341 IPR007527 GO:0008270
Viun5g00026 1078 SMART Ubox_2 620 684 IPR003613 GO:0004842|GO:0016567
Viun5g00026 1078 MobiDBLite consensus disorder prediction 47 120 - -
Viun5g00026 1078 SUPERFAMILY RING/U-box 613 687 - -
Viun5g00026 1078 SUPERFAMILY ARM repeat 733 1044 IPR016024 -
Viun5g00026 1078 Pfam U-box domain 618 687 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00026 Viun-Chr5 167262 174345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00026 610 768 U-box Gene Family AT1G71020 28.977 7.59e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00026 - - vra:106758533 1741.09