Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00021 ATGTCTATATATATATCCAAACCATGCTCACAACTCTCACACGCTCTTCCCTTCTTCGCCACCTTTCGCTTCTCGATTGCTTCAGCCATGTCAAACTCTCTCCATTCCTCTGCTTTCGTCACACCCAGATTGGTCCTCAAGAAGGTTCTCGCCAAATCTCAACACGAAGGCGACGGAGCCGTCGTTCGAAGAGGCATCGGAAGGACTGAGTTGAAGAACTTGGATCCCTTCCTCATGTTGGATCATTTCTCAGGATTTCCCGATCACCCACACAGAGGTTTTGAAACTGTCACCTACATGTTAGAGGGAGGTATTACTCACCAAGATTTTGCTGGGCATAAGGGTACAATCAGAGCTGGTGATGTTCAGTGGATGACTGCAGGTAGGGGAATTATTCACTCCGAAATGCCCGCAGAAGCAAACAACAAGGGATTGCAATTATGGATCAATTTAGCCTCCAGAGACAAAATGATCGAGCCCAACTACCAAGAACTTCCGAGCGAGAACATTCCAACAGCAGAAAAAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAATCGATGGGAGTGCAATCCCCCGTGTACACACGAACTCCAACCATGTTTCTTGTTTTCTCCATGATGCCAGGGAGTGAGTGGCATCAGAGCATTCCAGAGTCGTGGAATTGCTTTGTTTATGTGATTGAAGGAGAAGGGGTTTTCGGGTGTACGAGTTCATCTCCATGTGTGGCACACCATGTGCTTGTTCTGAGTCTAGGTGATGGCCTTAGCGTATGGAACAACTCTTCAAAGCCTCTGAGATTTGTTGTGGTAGCAGGACAACCACTGAACGAACCAGTGACTCAGTATGGGCCTTTTGTGATGAACACGCAGTCTGAGATTGAGAAAACCCTTGAAGACTACCAATATGGAAGGAATGGTTTTGAGATGAGGAAGTATTGGAGGTCTCAATAG 954 0.4686 MSIYISKPCSQLSHALPFFATFRFSIASAMSNSLHSSAFVTPRLVLKKVLAKSQHEGDGAVVRRGIGRTELKNLDPFLMLDHFSGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNKGLQLWINLASRDKMIEPNYQELPSENIPTAEKDGVEVRVIAGESMGVQSPVYTRTPTMFLVFSMMPGSEWHQSIPESWNCFVYVIEGEGVFGCTSSSPCVAHHVLVLSLGDGLSVWNNSSKPLRFVVVAGQPLNEPVTQYGPFVMNTQSEIEKTLEDYQYGRNGFEMRKYWRSQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00021 317 CDD cupin_pirin_N 60 151 - -
Viun5g00021 317 Pfam Pirin 63 149 IPR003829 -
Viun5g00021 317 PIRSF Pirin 41 315 IPR012093 -
Viun5g00021 317 Gene3D Jelly Rolls 56 302 IPR014710 -
Viun5g00021 317 SUPERFAMILY RmlC-like cupins 43 315 IPR011051 -
Viun5g00021 317 CDD cupin_pirin_C 199 275 - -
Viun5g00021 317 Gene3D Jelly Rolls 171 276 IPR014710 -
Viun5g00021 317 PANTHER PIRIN-RELATED 30 317 IPR012093 -
Viun5g00021 317 Pfam Pirin C-terminal cupin domain 203 307 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00021 Viun-Chr5 143022 144849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00021 41 312 Calmodulin-binding Proteins AT3G59220 64.516 3.45e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00021 K06911 - gmx:100775597 528.865