Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00016 ATGGGTTGCTTCCCCTGTTTCGATTCGAGTTCAAGTTCGAAGGAGGATCACAACCACCGTTCTCACCACCACCCACAACCCAATTCCAATCCCAATCCCAATCTGTCACTCCCTTCTCAGATTTCCAAGTTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAATTGCCTCCTTCCAACACCAAGGAAGGACACGGACCTCCCGTCCAAATCGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACCAAAAACTTTAGGCCAGAATCCTTTGTAGGGGAGGGTGGTTTCGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTAGACAAAAATGGTCTGCAGGGTAATAGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATTGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTTTGCCTTTGGGGTCATTGGAAGATCACCTTCATGATGTTCCCCCTGATAAGGAACCACTAGATTGGAACACTAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAATACCTGCATGACAAGGCAAATCCCCCTGTCATTTATAGAGACTTCAAGTCGTCTAACATATTACTTGACGAAGGATACCACCCTAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACAGTGAAGTCTGATGTATATAGCTTTGGGGTTGTGTTCTTAGAGCTTATTACTGGCCGAAAAGCAATTGACAGCACCCAGCCCCATGGAGAACAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCTAGGCTGCAGGGACGGTTTCCCATGCGGGGTCTTTACCAGGCTCTAGCTGTTGCATCAATGTGCATTCAAGAATCAGCTGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTTGCCAACCAGGGATATGATCCCAACAATGGTGGGCATGGTTATAGGGGGTCTAGCGATGACAAAAGGAACAGAGATGATAAAGGTGGAAGAATACTGAAAAATGATGAAGGGGGATCTGGGCGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCGCGAGAAACTGCAAGAATGTTAAATAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGCTGTGGGGAGAGAACTTGAGACAAAAAAGACAACAAAGTTTGCAAGAGGGCAGTTAG 1398 0.4721 MGCFPCFDSSSSSKEDHNHRSHHHPQPNSNPNPNLSLPSQISKLPSGADKLRSRSNGGSKRELPPSNTKEGHGPPVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFLPLGSLEDHLHDVPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQGYDPNNGGHGYRGSSDDKRNRDDKGGRILKNDEAXGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKLWGENLRQKRQQSLQEGS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00016 466 FunFam Serine/threonine-protein kinase PBS1 68 171 - -
Viun5g00016 466 MobiDBLite consensus disorder prediction 25 43 - -
Viun5g00016 466 MobiDBLite consensus disorder prediction 377 438 - -
Viun5g00016 466 Gene3D Transferase(Phosphotransferase) domain 1 172 381 - -
Viun5g00016 466 MobiDBLite consensus disorder prediction 387 438 - -
Viun5g00016 466 CDD STKc_IRAK 101 369 - -
Viun5g00016 466 SUPERFAMILY Protein kinase-like (PK-like) 79 367 IPR011009 -
Viun5g00016 466 ProSiteProfiles Protein kinase domain profile. 95 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00016 466 Gene3D Phosphorylase Kinase; domain 1 79 171 - -
Viun5g00016 466 FunFam Serine/threonine-protein kinase PBS1 172 385 - -
Viun5g00016 466 Pfam Protein kinase domain 98 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00016 466 PANTHER OS07G0668900 PROTEIN 3 381 - -
Viun5g00016 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Viun5g00016 466 MobiDBLite consensus disorder prediction 1 77 - -
Viun5g00016 466 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00016 Viun-Chr5 113865 117873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00016 1 372 Glycoside Hydrolase AT3G07070 61.702 1.46e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun5g00016 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00016 K13430 - gmx:100305422 809.29