Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02822 ATGTCCTCTACGAGGTTCGGATTCTTCTTCTGCCATTGTCACAGACTCTTCCCAACACTTTCTTCTTCCTTTGCTTTTTCACGCCCAAGATCCCTCTCTACCACTCCATACCCTCTCCAATATGAACTCATTATCAACCGTCCATCTTACCCTCACCCACCAACTGTTCGACCAATTGACTCACCCGAACCCGACGACCCCACTTCCGAGACTCCTCCCCAACTCGACAAGGCCCAGAGGAAGTACTATAACAAGCGCAGGAAAAGGATGTACGGCTCCGATTCTGACCAAGAGAACGCTGGGCGCCGTGACGAAGGGTTCGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACCCTGCATAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGCTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAACCGGGACAGTCAAATATCAATAGTGCAAATGTTGATGTTAATGAAGATGGACGAGGGGGCGAGGGAAGGAAGAAAGTTGTTGGGGTGGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAGAAGGGCGAGGAGGGTGAAAGAGGAAGTAGAGAACTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGGTCCTGGTAGTAACAAGGACGTTCTAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTATGTGTTGGCAAAGCAACGAAACTGGTAGACAGATATCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAGGAATGCTTTGTCCTTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAGAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAAGTGACAGACAAAACTTGGTTTTTAGAGTGAAATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGATAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTCAGCCGACGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAGTTATCTCTAA 1446 0.471 MSSTRFGFFFCHCHRLFPTLSSSFAFSRPRSLSTTPYPLQYELIINRPSYPHPPTVRPIDSPEPDDPTSETPPQLDKAQRKYYNKRRKRMYGSDSDQENAGRRDEGFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNINSANVDVNEDGRGGEGRKKVVGVDEKLVFFEGKEKGEEGERGSRELKEKKVEEFFKGLKKGPGSNKDVLVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLVFRVKCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02822 481 CDD PseudoU_synth_EcTruB 264 475 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun4g02822 481 Pfam TruB family pseudouridylate synthase (N terminal domain) 283 433 IPR002501 GO:0006396
Viun4g02822 481 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 152 479 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun4g02822 481 MobiDBLite consensus disorder prediction 88 105 - -
Viun4g02822 481 Hamap tRNA pseudouridine synthase B [truB]. 261 481 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun4g02822 481 FunFam tRNA pseudouridine synthase B 258 480 - -
Viun4g02822 481 Pfam tRNA pseudouridylate synthase B C-terminal domain 434 477 IPR032819 -
Viun4g02822 481 NCBIfam tRNA pseudouridine(55) synthase TruB 263 472 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun4g02822 481 MobiDBLite consensus disorder prediction 51 69 - -
Viun4g02822 481 Gene3D Pseudouridine synthase 258 480 - -
Viun4g02822 481 MobiDBLite consensus disorder prediction 48 105 - -
Viun4g02822 481 SUPERFAMILY Pseudouridine synthase 263 476 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02822 Viun-Chr4 42402477 42407205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02822 264 455 NAC Transcription Factor Family AT3G57150 33.854 1.75e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02822 K03177 - gmx:100793939 714.146