Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02818 ATGGGATCTGGCAACGAGGTTCACTCAGTTGAGGAGTTCAATTTGGAATCCAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGTCCAAAAATTGGAGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAAAACGTTGCTGTTAAGATCATAAACAAGGGAGAAACCCCAGAAGAGATTTCAAGGAGACAGGCTCGGTTTGGCAGAGAGGTTGCTATGTTGTCGAGAGTTCAGCACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTTATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGCGGCCCAAGTGCTTGGATATGCCCGTGGCTGTTGGATTTGCTCTTGATATTGCTCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGCGATCTTAAACCTGATAACTTGATCTTAACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAATCCTTAACAGAGATGATGACTGCTGAAACCGGAACATATCGATGGATGGCTCCGGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCACAACAAGTTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTCAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTGGCTCTGATTGTGACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCACCACCAGAGCCTGTTCTTCATCTGCGGATGACTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGCACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA 1059 0.4344 MGSGNEVHSVEEFNLESKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRRQARFGREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPSDRPNFSEIIQMLLRYLSTISPPEPVLHLRMTSSDNVVLPPESPGTSALMLGRDDSGETSTDKAEDRPKGFFFCFNQCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02818 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Viun4g02818 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Viun4g02818 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Viun4g02818 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Viun4g02818 352 Gene3D Phosphorylase Kinase; domain 1 13 105 - -
Viun4g02818 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Viun4g02818 352 FunFam serine/threonine-protein kinase HT1 107 307 - -
Viun4g02818 352 MobiDBLite consensus disorder prediction 315 337 - -
Viun4g02818 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02818 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Viun4g02818 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Viun4g02818 352 CDD STKc_MAP3K-like 32 286 - -
Viun4g02818 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02818 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 286 - -
Viun4g02818 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Viun4g02818 352 Gene3D Transferase(Phosphotransferase) domain 1 106 302 - -
Viun4g02818 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02818 Viun-Chr4 42336659 42339895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02818 9 352 MAP Kinase Kinase Kinase AT5G50180 77.907 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun4g02818 PK_Tyr_Ser-Thr 3.3e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02818 - - gmx:100792887 651.358