Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02817 ATGATCTGGATTGTGGGTTGGAGTCCCTTTGTTGAGTTGATAAGGAAAAAAACATTCTTTCGATTTCTGGGTGGTCTTGTTTCGGAAAAACTTGTGTCAGAGAAACATCCCTGGCTCGGTTCTTGTAGGAGTTGTCTTAATGACATTGGAGGATTTGCAGGGAAAGTGAAAAATACTACTCTTTCAGCTGTTGATCAAATGAAGAACTGTGAAACATATCTTCAATGTCCCAATTGTCATTATCATACTAATAACAGTGATATTTCTGATGAGTGGCCTGACTTTCCTATTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAACAGAGAGCAACATGTGTTTATTCATAAGTTCATCCCAACTTTAGAAGGGGAGAAAGGGATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAGAAAAGATGGGAACAGTGTTCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGGCGAAGGAAGCGTAGGAAGATTCATCATGAAGATGGTTTGAGTGAGGAGCATGTTCGGTGGCACAAGACTGGTAGGACCAAATCTGTGATAGAAGATGGAGTTCATAAGGGCTTCAAGAAGATCATGGTGCTTTATGTAAGGCCTAAGGAAGGGTCAAAGGCATATAAGACCAATTGGGTGATGCATCAGTACCATCTGGGGAGTGAAGAAGAGGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAGCAACAGAAGCACTCTGAGAAGAATGAGGAGAATGCAGCAGTAGTTGAAGATTCTAACATAGCAGCACAAACAGGTCCAAGTACCCCAAAACCAAATCCTCCTACTCGACCATGCACAGCCAAATGTGATGACAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATTACTTGCCCCACCATCTGATGTTCAGGGTGAGGATGTTAAGGTTGACCCTGCATGGCTGGCTGGTGAATCACAAGCTGATTGTGACTTTCATGGCTTGGAGGAAATCTTGTTAATGTCAGATTCATCTGCTCTTTTTAATCATTCTGGATTGGCCTCCACTTTGTATGGCACACCTGGAAACAATGATGATTATGCATCTTCTGGAGTTTCTGTGCTAGACACCCCGGAATCAGATAACCCTTCAGATTTTGATCTTTGTAACTTGCAATTTGGCTCTCAAGACAGCACCCTTTACTGGATGGACAAGCTATGA 1263 0.4173 MIWIVGWSPFVELIRKKTFFRFLGGLVSEKLVSEKHPWLGSCRSCLNDIGGFAGKVKNTTLSAVDQMKNCETYLQCPNCHYHTNNSDISDEWPDFPIGVKFDPSDVELLKHLEAKCCVGNREQHVFIHKFIPTLEGEKGICYTHPENLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHEDGLSEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRPKEGSKAYKTNWVMHQYHLGSEEEEKDGEYVVSKIFYQQQKHSEKNEENAAVVEDSNIAAQTGPSTPKPNPPTRPCTAKCDDNELLSFIQDAKPIPGELLAPPSDVQGEDVKVDPAWLAGESQADCDFHGLEEILLMSDSSALFNHSGLASTLYGTPGNNDDYASSGVSVLDTPESDNPSDFDLCNLQFGSQDSTLYWMDKL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02817 420 Gene3D NAC domain 104 261 IPR036093 GO:0003677|GO:0006355
Viun4g02817 420 ProSiteProfiles NAC domain profile. 95 256 IPR003441 GO:0003677|GO:0006355
Viun4g02817 420 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 44 323 IPR044799 GO:0003700
Viun4g02817 420 FunFam NAC domain-containing protein 8 104 260 - -
Viun4g02817 420 Pfam No apical meristem (NAM) protein 96 237 IPR003441 GO:0003677|GO:0006355
Viun4g02817 420 SUPERFAMILY NAC domain 80 256 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02817 Viun-Chr4 42331447 42334885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02817 76 258 NAC Transcription Factor Family AT1G28470 55.851 7.55e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g02817 NAM 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02817 - - vun:114182499 873.618