Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02801 ATGGAAAAAGAGATTTTGGAAAGTCTTTGGAATGGTGATGGAGAATCTCAAGTTCAAGCAGCTTTGGAACTCTGCAGATTAAGCAGAAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAGTAGAAGCTGCTCTCTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAACAAGATTCGGATCATCAAATATGGAGCTTTGGCAGTTCTGGTGAGTCTCCTCCACTGTGATAGCCAGAGAGCAACACACTTGACTTTGGCAGCAATGCTAACTCTCTCTTCTTGCAAAGCAAACAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAGCTCTTGGTTGGGTTTGTAAACAATAGCAATTGCAGCATTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACCTGCAAAGAGATTGTTCCATTGATTGTGTCTTCTGGGGTTATGATGTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACATTGTGTCTTCATCAGAGAGTGCATTGTGTGAGGCTGGTAGTACTATTGGAGCAATCAGGATACTGGTTGAGACTGTTGAAGATGGATCTTCAGTGAGCAAAGAGCATGCAGTGTGTGTACTTCTCCTTGTGTGCCAGAGCTGCAGAGAGAAGTATAGAGAGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTTTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTGATCATGAGCTTGTAGAGAGGATAATGGATGAAATTGAAGCAGAAGGAGAGGAATTGGCAGATACTACTTTGAGATTGGTGGAGGAGATGATTGCAAAGCTTCACGCTTAA 990 0.4333 MEKEILESLWNGDGESQVQAALELCRLSRKQRHKLEESRVMVPLISMLHSENYEAVEAALCALLSLSFGSERNKIRIIKYGALAVLVSLLHCDSQRATHLTLAAMLTLSSCKANKVAIASSGAVQLLVGFVNNSNCSIQSQLDAIATLQNLTTCKEIVPLIVSSGVMMSLLELIHTSVKSSPLVEKAIGLLENIVSSSESALCEAGSTIGAIRILVETVEDGSSVSKEHAVCVLLLVCQSCREKYRELILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQIDHELVERIMDEIEAEGEELADTTLRLVEEMIAKLHA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02801 329 FunFam U-box domain-containing protein 4 3 198 - -
Viun4g02801 329 SMART arm_5 111 153 IPR000225 GO:0005515
Viun4g02801 329 SMART arm_5 28 68 IPR000225 GO:0005515
Viun4g02801 329 SMART arm_5 70 110 IPR000225 GO:0005515
Viun4g02801 329 SMART arm_5 154 196 IPR000225 GO:0005515
Viun4g02801 329 FunFam U-box domain-containing protein 4 202 318 - -
Viun4g02801 329 Gene3D - 3 204 IPR011989 -
Viun4g02801 329 Gene3D - 205 313 IPR011989 -
Viun4g02801 329 PANTHER U BOX DOMAIN-CONTAINING 5 283 - -
Viun4g02801 329 Coils Coil 326 329 - -
Viun4g02801 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Viun4g02801 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Viun4g02801 329 SUPERFAMILY ARM repeat 4 312 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02801 Viun-Chr4 42234060 42236554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02801 4 282 U-box Gene Family AT3G54790 34.266 2.31e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02801 - - gmx:100778534 520.39