LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g02798	ATGGAGTCTCCTGTTAATGGAGTTGATTCCTTGCCAGAGATTCAGAATTCAGTTTCTGAGGTAAATCAGGTAAATCATGACCCTCTTTCATCTGGGTCTCCCCTACCTTCTCGGCCACCCCTGAGAGCATCTAGAACCTGTGATGGTGGTCATCAAACTAAGATCATCCACCATCAAAACAGCCATGTAATTAATCAAAAGCATTCCCATGAAGAGGGCAATAACTTGAACAAAGAAGGGTTGCCAGCAAAATTGTCCACCAAGAAGCCACCACTTGATGATTCCAAGGGTTGTGAGTCAAATGGTGTGTTAGTAGTGTCAGAATCTGAGAGGAAAGGAACGGTTGATAATCATAATCATAATCATGCAAAGAGCCACTCTCAGCCAGTGGCTACATTCTGCCCAAGTCCTCAGAACAGTTTCTATGCAGCCACTGTCTATTCAGAAGCCAAAGGAAGTTTCACCAACACTGAACTCAGTGAGTGTGCCAGTGTTGACAAGTCATGTGAAAGTGAAGAAGTGGCGAATTCCAGTGATTTTAATGAGAGCAGAAAGACAAGCATATGTAGAGCAAGTACTGGCAGTGATGCCAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTTTTGTATAAGCCTCACAAGGCAAATGACATAAGATGGGAGGCTATTCAAGCTGTTCGAATCAGAGATGGGGTGTTGGAAATGAGGCATTTCAGATTGTTGAAGAAACTGGGGTGTGGAGACATAGGGAGTGTGTATCTGGCGGAACTGAGTGGCACAAGAACTTCTTTTGCCATGAAGGTCATGAACAAGACCGAGCTGGCGAACCGCAAGAAGCTCCTGAGGGCTCAGACAGAGAGAGAGATATTACAGTCCCTGGATCATCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAAACATTTTCCTGCTTGGTAATGGAGTTTTGCCCCGGTGGGGACCTGCATGCACTAAGGCAAAGACAACCAGGGAAGTATTTTTCAGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTAGGGATCATCTACAGAGACCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTGAGTCCAACTCTAGTGAAGTCATCAAACACCTTGGAGACCAAAAGCTCAGGATACTGCGTTCAGCCCTCCTGCATCGAGCCGACCTGCGTGATGCAGCCGGACTGCATCCGGCCGCCGTCGTGCTTCACACCTCGCTTCTTCTCCGGAAAATCCAAGAAAGACAAAAAGTCCAAACCAAAGAACGACATGCACAACCAGGTGACCCCTCTTCCTGAGCTAATTGCCGAGCCAACAAATGCAAGATCAATGTCCTTCGTTGGAACACACGAGTACTTGGCCCCAGAGATCATCAAAGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCCTCTATGAGCTTCTCTTTGGTAGAACACCATTCAAAGGTTCTGCAAACCGTGCAACTCTGTTCAATGTCATTGGTCAGCCTCTAAGGTTTCCAGAATCTCCAACTGTTAGCTTTGCTGCAAGGGATTTGATCAGAGGGTTGCTTGTGAAGGAGCCTCAGCATCGTCTTGCTTATAGACGCGGCGCCACAGAGATCAAACAGCATCCATTCTTTCAGAATGTTAACTGGGCACTCATCCGTTGTGCAAATCCTCCAGAGGTTCCAAAACAGGTTATGAATCTTCCTCAAACGGAAAAGGACCTTGGTGTGAAGCCTTCTGGTAATAATTATTTAGACATTGATTTCTTCTGA	1866	0.4609	MESPVNGVDSLPEIQNSVSEVNQVNHDPLSSGSPLPSRPPLRASRTCDGGHQTKIIHHQNSHVINQKHSHEEGNNLNKEGLPAKLSTKKPPLDDSKGCESNGVLVVSESERKGTVDNHNHNHAKSHSQPVATFCPSPQNSFYAATVYSEAKGSFTNTELSECASVDKSCESEEVANSSDFNESRKTSICRASTGSDASDESSTSSLSSVLYKPHKANDIRWEAIQAVRIRDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNTLETKSSGYCVQPSCIEPTCVMQPDCIRPPSCFTPRFFSGKSKKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPKQVMNLPQTEKDLGVKPSGNNYLDIDFF	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g02798	621	SMART	serkin_6	239	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02798	621	MobiDBLite	consensus disorder prediction	64	99	-	-
	Viun4g02798	621	MobiDBLite	consensus disorder prediction	9	32	-	-
	Viun4g02798	621	Gene3D	Transferase(Phosphotransferase) domain 1	323	392	-	-
	Viun4g02798	621	CDD	STKc_phototropin_like	237	594	-	-
	Viun4g02798	621	MobiDBLite	consensus disorder prediction	1	48	-	-
	Viun4g02798	621	Gene3D	Phosphorylase Kinase; domain 1	237	322	-	-
	Viun4g02798	621	FunFam	serine/threonine-protein kinase D6PK-like	323	390	-	-
	Viun4g02798	621	FunFam	Serine/threonine-protein kinase D6PK-like	237	322	-	-
	Viun4g02798	621	FunFam	serine/threonine-protein kinase D6PK-like	471	594	-	-
	Viun4g02798	621	Gene3D	Transferase(Phosphotransferase) domain 1	470	594	-	-
	Viun4g02798	621	PANTHER	FLIPPASE KINASE 1-RELATED	76	598	-	-
	Viun4g02798	621	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	360	372	IPR008271	GO:0004672\|GO:0006468
	Viun4g02798	621	ProSiteProfiles	Protein kinase domain profile.	239	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02798	621	Pfam	Protein kinase domain	240	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02798	621	Pfam	Protein kinase domain	473	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun4g02798	621	SUPERFAMILY	Protein kinase-like (PK-like)	214	599	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g02798	Viun-Chr4	42225169	42229176	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g02798	147	621	AGC Kinase Gene Family	AT5G47750	72.008	0.0	719

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Viun4g02798		Pkinase	7.2e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g02798	K08286		-	gmx:100810909	1013.83