Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02797 ATGACGATCGTGGCCTTGTTACTGAGTTTTCTGGTAACGGTGACGGTGGTGGTGTCGCCGTCGCACGCGGCTTCCAGTGGTCCCCACATTGCTGACGTCAACTTGCTCTTGCCGCCAAAAATGACGTATCCAGTTGATTACCGGCTCCAAGGAAGCGACGGTTGCTTCCAATGGTCATGGGATCATCATGACATTCTGTCTGTTGAGCCTGAGTATAATTCAACCAGCAAGTGCTCGACTAGTGCAAGATTAAGATCCATTTCCCCTTACAGTGGGCGGAAAGAAACTGCTGTTTATGCTGCGGATTTGAAAACTGGGATTGTGATTCGCTGCAAAGTCTTTATTGACAACATATCACGAATACAGATATTTCATAATTCTATTAAACTTGATTTAGAGGGGCTTGCCACACTACGTGTTCGAGCCTTTGATAATGAAGAAAATGTATTTTCTTCATTAGTTGGCTTACAGTTTATGTGGAGCCTTATGCCTGAAGCCAATGGATTACCTCATCACCTTGTTAATGTTCCACTAAAGGATTCTCCCCTTAGTGATTGTGGGGGATTATGTGGTGACTTAGATATACAAATAAAGCTTGAAGAAAATGGTGTATTTTCAGATCTTTTTGTAGTAAAGGGAATTGAGATTGGTCATGAGATTGTGTCAGTGCGTTTGCTTGAGCCACAGTTAAAGAATTTAGCAGATGAGATTGTTCTTACTGTTGCTGAAGCTATGTCCCTTGATCCTCCTTCACCGGTTCTTGTACTTGTTGGTGCAGTCATTCCCTACACCCTTAAAGTCATCCGGGGAAATGTTCCTGAAGTGGTGACTTTACCGTCTCCGCATCACCAATGGTCTGTCTCAAATGCTTCGGTTGCTCAGGTTGACTTAAAAACAGGGTTAGCATACGCATGGAACTTGGGCATGACAGCTGTTATTGTTGAAGATACTAGGATTGCTGGCCATGTACAAGTGTCTTCATTGAATGTGGTCTTACCATCTTCTCTATGTTTGTATATATCACCTTTATCTAGTTCTGGTGATCCAGTGGAAGGAGTCAAATCTAACCCTCTGAAGACCCGTTGGTACGTTGTATCTGGCCATCAATATCTTATCCAGATAAAGGTTTTTGCACAGGATCATCATGCACAAGAAATTTATATTACAGAGAATGATGATGTTAAGGTTTATGATAACGATTCTGATCAATACTGGAAAACATTTTGGGTTTCAAATGATATTGCTGTTAAACATGGCTGGCGGAATTCTAAAATCTTGGAGGCTTATTCACCAGGACTTGGAAAATTGACAGCTTCTTTGAGCTACCCTGGTGGGGCTGATGACAAAAAGGAGATTATCAAAGCTGTGCAAGAAATCATGGTTTGTGATAAAGTAAAGTTCACTTTGGTCAATGATAGTGGAATAATCTTATTGCCATGGTCACCGGGTGTTTATCAGGAGGTGGAGTTAAAGGCTACAGGAGGTTGTGCAAAAACAGTGAATGACTTCAGATGGCTATCTTCAGACTCGTCCACAGTATCTGTATCAGCTTTTGGTATTGTCCAGGCAAAAAAACCTGGTAAAGCTACTATCAAAGTGTTATCTGTATATGATTCACTAAATTATGATGAGGTCCTCGTTGAAGTCTCCATTCCTTCTTCTATGGTTGTGCTTCACAACTTTCCTGTAGAAACTGTTGTTGGATCATATCTCAAAGCTGCTGTGACAATGAAAGCAGCAAATGGTTCCTTTTTCTATGTATGTGATGCCTTTAATTCATTGATAAAGTGGAAATCTGGAAGTGAGTCTTTTGTAATTGTCAATGCAACTCAGGAGTTGTTATACTTGAAAGAGCCAAATACTCAGCTCCAATCATCAGTCGATGGTTCTCCGTGTTCGTGGACATATGTTTTTGCTTCTCATCCTGGTCAAGCTGTAATTCATGCCATTTTTTCCAAAGAAGATCACCACTACAGTCATAGTCCTGTTGCACTAAAAGCATCCTTACGCATTGTGGCATATCTACCCCTTGTTCTACACCAGGCAGGTGACGGAAACCGATTTGGTGGTTACTGGCTTGATTTGGCTCAAGCAGAAAATGACAAGCAGTCACATGGTTTAGAGGAGTTATATCTTGTACCTGGCACAAGTTTAGACATTGCACTTGTTGGTGGTCCTGAACGATGGGACAAAGGTGTGGATTTCATGGAAACTGTGGAAGTTTTGGATGAAGCCAATGCTCTAGCTGAAGATGGAATTCTTGTGCATCGTGTATCTGGTAGCTTAAGGAATTTGTATGGAGTTTTATGTCAAAGACTGGGAACCTTTAAACTTCGTTTTAAACGTGGAAATTTGGTTGGGGATGACCATCCTCTGCCTTCAGTAGCTGAAGTTTGGTTGTCTGTGATGTGTAGCATTCCTTCTTCTATTGTAGTTATAGCTGATGAACCAGTGAATGAACGCAGAATAATTAAAGCAGCAGCTCAAGCTGAACGTAGTTCAGGTAGAATTCATGATACCCCTGTTATTGTGGCAAATGGACGCACTATTCGTGTATCTGCAGTTGGTATCAGTGATTTGGGAGAGGCTTATGCAAATTCATCTTCTCTCAATTTGTGGTGGGAACTTAGCAGTTGTGAGGGACTGGCCTACTGGGATTATGCTTTGGATATAGTGAAGTCTAACAGTTGGGAGATGTTTCTGGCCTTGCAAAATGAATCAGGACTGTGCACTGTTCGTGCTACTGTTACTGACTTTACTGATATCTTGGGAGATGATACATTTCACGGGTTTACTGAAACAGAAAATGTTCTGACAGATGCAATTCATTTACAGCTTGTTTCTACTCTTAGAGTTGATCCAGAGTTCAAATTGATATATTTCAATCCTGATGCAAAGGTAAATCTGACTATTGTTGGTGGGAGCTGTTTCTTGGAAGCTGTTACAAATGATTCTCAAGTTGTAGAAGTTATTCAACCCCCATCTGGGTTTGAATGCCTACAATTGATTTTGTCCCCTAAAGGGCTAGGGACAGCTAATCTGAATATATATGATATTGGGCTAAATCCTCCACAAAGAGCTTCTGCACTTGTTCAAGTTGCAGATATAGAGTGGATCAAGATCATATCAGGAAAAGAGATTAGCCTGATGGAAGGAAGTTTACAAACTATTGACTTATTGGCTGGTAGTACCTGTGGAAATAGTTTTGATGCTTCTCAGTTTGTTTACATGAATCTTCATGTACACATTGAGGATAGTATAATTGAGCTGGTGGATACTGACGATTTCTCAAGTCTTGTTGGTGGACATGTTAATGCACCAAGTTTTAAAATAAAAGGGAAACATCTTGGAATTACAACCCTTTATGTCAGTGCTGTACAACATTTGGGACACGTAGTACAAAGTCAAGCTATTAAGGTGGAAGTTTACGCAGCCCCAAGAATACACCCTGACAATATTTTCCTACTGCCTGGTGCATCGTATGTGCTTACAATGGAAGGAGGCCCAACTCTCGGGGTTCATGTTGAGTATGGAATTGAAAATGATAAAATTGCAAGTATTGATAGATATTCTGGTCGACTCTCAGCAAGTTCTGTTGGGAACACTACAATTACTGCTAGTGTCTTTGTGAATCGTAACACTGTGGTATGTGAAGCGCGGAGTATTTTACGGGTGGGAATTCCGTCTACTGTCATGTTGCATGCACAGAGTGAACAACTTGGGATTGGCCGCAAATTGCGAATTTATCCATTATTTCCCGAGGGTACTCTGTTTTCTTTCTATGAGCTATGTAAAAATTACCAGTGGATCATTGAAGATGAAAAGGTATTGAGCTTCAAGATGGCAGAGACCTTGCGCGGGGATAGAATCCAGTTTACTACTTCAGCAGGAAGTCAAGATAATAGTTATTTTGATGAAAATAACATTGGCTTTATTAATGTCTTGTATGGAAGATCACCAGGCAAGACCAATGTTGCTGTGTCTTTCTCGTGTGAACTTTCAACTTCTGGGTCAAGGGCACAGTCGATGTTTTACAGTTCATCTTTGTCAGTAACAGTAGTTCCTGATCTTCCACTGGCTTTGGGAATCCCCATCACCTGGATTCTTCCTCCCTACTATACAATGACGAGCAGTTTGCCTTCATTGTCGGAATCCTATGCACAATATGATAGTCGGAATCGCAGGGGAATCATCAGCTATTCTTTATTGAGAAGTTTGGAGAAAAACGATGCTATTCAAAAAGATGCCATATTCATTGACGGGGACAGAATTAAAACTACCAAAAGTAATAATCTTGCTTGTATTCAAGCTAAAGATCGTACAACAGGAAGAACAGAGATTGCTTCTTGTGTCAAGGTTTCTGAGGTGACTCAAATTAGAATAGCCAGTAAGGAGGTTCTCCTCAATGTGATTAACCTTGCTGTTGGTGCAGAACTTGATCTTCCAACAAACTTTTATGATGCTCTAGGAAATCCTTTCCACGAAGCCTACAATGCTGTGCCTTTTTATGCTGAAACTAACTACCCTGATGTTCTCTATGTGAACAAAACAGCTGATGGAAAAGGCAATGTCCATATCAAGGCAATTCGGCATGGTAATGTTCTTGTGCGTATATCAATTAGTGAAGATCTGCAGAAATCAGATTATGTGCTGATTAGAGTGGGTGCCCATATATATCCGCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAGGTTTGAGTGATACAGTTTCTGGACAGTGGTTTACTACAAATAGAAGTGTAGTATCCGTTGATACGCTATCTGGGGTGGCCAAAGCTATTGGGCAAGGTTCAGCCCAAGTATCTTTTCGTTATGGAGGATCAAAACTGCAAACAACAATTACAGTGTTGAAAGGAGATTATATTTCTGTGCTTGGTCCAAAGGAGATGTTAACTAATGTCCCATACCCCTCGAAAGGTTACAACTTCTCCGTGAAATTCAGTAATTCTTACAGTGAATCCTTTGGTGCACCTGGAGAAAACAAGAGAATTTTATTCAATTGTAGAGTAGATCCACCATATGTGGGGTACGTGAAGCCATGGCTGGATCAGGACTCTGGCAATTCATATTGCTTATTTTTTCCTTACTCACCAGAGCATTTGGTGCACTCAGTACCTAAGTTCGAAGGCATGAGGCCAGATGTATCAGTTACCATTTCTGCTTCTCTTGAAAATGAACATATATCTGGATCTGCTTCTGCACTTTTTATTGGCGGATTTTCTATAATGGAGATGAGCAAGAATCCGTTGCTGCTGAATCTGACACCAGGCTCAAACAAAACTGCCATTACCATATTGGGAAATACTGATGTTGAAATTCACTGGCATCATCGAGATTTGATTATGATCAGTCTTATCCACAGAGAAGATATTGGCATTCGTGGGTTTGCACGGTATGAGGTCCAACTTCTGAAAGCAAAGAGATTCAGAGACAAAATCCGCATCACACTCCCAGCTAATGGCCAGAGTGTGGAAATAGACGTGAACCATGAACCTGAGGAAACAGCACCATCCAGCATAGCCATAAATAAAGCCTTCTGGGGAAGTATCCTAGGATGTTTTCTGCTATTGATTTTATCAATCGTTATCTTCACACGTTTCTTGGACAAACCAGAGAGATCTCACCAAACAAGTTCCTCGGTTACTACAACTACAAGCATTGCAGCTCCCATAACTCCAGATAGAAGCAACGCGTCTTCTGTAAATGAAATGTCTCCGCGAACACCTCAACCATTTGTAGACTATGTGAGGAGAACCATCGACGAAACTCCATATTATAAGCGAGAAGGGAGAAGAAGGAAAATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTCATCAAGCACTTTGGGAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGTGGATTCGGGTTTATAACGTACGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCACGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGACGAATTCAGAGACTTCTTTACTCGCTATGGTGAAGTAAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCGAAGAAACCAAACTCTGCACCTCCATCATCCAAGCGCTACAACGACTCAAGGTCTTCATACAGTGGTGCTGGATATGGAGATGCCTATGATGGATTTGGTGGCAGTTTTGGAGTTGGGGGTGGTTATAGGTCAGGTGGAGCTTATGCTGGCGGCAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCCGGTGCGATGGGGCCATACAGAGGAGATCCCTCCCTCAGTTATGCCGGTCGATACGGTGGAAGCTTTAGTAGAGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGGGCATATGGTGGTGGTGGTGGTGGTTCTTCTGGTGGTGCCGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGAGGTGGATATGGAGGGTCTAGTGGAGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 6831 0.4196 MTIVALLLSFLVTVTVVVSPSHAASSGPHIADVNLLLPPKMTYPVDYRLQGSDGCFQWSWDHHDILSVEPEYNSTSKCSTSARLRSISPYSGRKETAVYAADLKTGIVIRCKVFIDNISRIQIFHNSIKLDLEGLATLRVRAFDNEENVFSSLVGLQFMWSLMPEANGLPHHLVNVPLKDSPLSDCGGLCGDLDIQIKLEENGVFSDLFVVKGIEIGHEIVSVRLLEPQLKNLADEIVLTVAEAMSLDPPSPVLVLVGAVIPYTLKVIRGNVPEVVTLPSPHHQWSVSNASVAQVDLKTGLAYAWNLGMTAVIVEDTRIAGHVQVSSLNVVLPSSLCLYISPLSSSGDPVEGVKSNPLKTRWYVVSGHQYLIQIKVFAQDHHAQEIYITENDDVKVYDNDSDQYWKTFWVSNDIAVKHGWRNSKILEAYSPGLGKLTASLSYPGGADDKKEIIKAVQEIMVCDKVKFTLVNDSGIILLPWSPGVYQEVELKATGGCAKTVNDFRWLSSDSSTVSVSAFGIVQAKKPGKATIKVLSVYDSLNYDEVLVEVSIPSSMVVLHNFPVETVVGSYLKAAVTMKAANGSFFYVCDAFNSLIKWKSGSESFVIVNATQELLYLKEPNTQLQSSVDGSPCSWTYVFASHPGQAVIHAIFSKEDHHYSHSPVALKASLRIVAYLPLVLHQAGDGNRFGGYWLDLAQAENDKQSHGLEELYLVPGTSLDIALVGGPERWDKGVDFMETVEVLDEANALAEDGILVHRVSGSLRNLYGVLCQRLGTFKLRFKRGNLVGDDHPLPSVAEVWLSVMCSIPSSIVVIADEPVNERRIIKAAAQAERSSGRIHDTPVIVANGRTIRVSAVGISDLGEAYANSSSLNLWWELSSCEGLAYWDYALDIVKSNSWEMFLALQNESGLCTVRATVTDFTDILGDDTFHGFTETENVLTDAIHLQLVSTLRVDPEFKLIYFNPDAKVNLTIVGGSCFLEAVTNDSQVVEVIQPPSGFECLQLILSPKGLGTANLNIYDIGLNPPQRASALVQVADIEWIKIISGKEISLMEGSLQTIDLLAGSTCGNSFDASQFVYMNLHVHIEDSIIELVDTDDFSSLVGGHVNAPSFKIKGKHLGITTLYVSAVQHLGHVVQSQAIKVEVYAAPRIHPDNIFLLPGASYVLTMEGGPTLGVHVEYGIENDKIASIDRYSGRLSASSVGNTTITASVFVNRNTVVCEARSILRVGIPSTVMLHAQSEQLGIGRKLRIYPLFPEGTLFSFYELCKNYQWIIEDEKVLSFKMAETLRGDRIQFTTSAGSQDNSYFDENNIGFINVLYGRSPGKTNVAVSFSCELSTSGSRAQSMFYSSSLSVTVVPDLPLALGIPITWILPPYYTMTSSLPSLSESYAQYDSRNRRGIISYSLLRSLEKNDAIQKDAIFIDGDRIKTTKSNNLACIQAKDRTTGRTEIASCVKVSEVTQIRIASKEVLLNVINLAVGAELDLPTNFYDALGNPFHEAYNAVPFYAETNYPDVLYVNKTADGKGNVHIKAIRHGNVLVRISISEDLQKSDYVLIRVGAHIYPQNPVLHIGSPLNLSIKGLSDTVSGQWFTTNRSVVSVDTLSGVAKAIGQGSAQVSFRYGGSKLQTTITVLKGDYISVLGPKEMLTNVPYPSKGYNFSVKFSNSYSESFGAPGENKRILFNCRVDPPYVGYVKPWLDQDSGNSYCLFFPYSPEHLVHSVPKFEGMRPDVSVTISASLENEHISGSASALFIGGFSIMEMSKNPLLLNLTPGSNKTAITILGNTDVEIHWHHRDLIMISLIHREDIGIRGFARYEVQLLKAKRFRDKIRITLPANGQSVEIDVNHEPEETAPSSIAINKAFWGSILGCFLLLILSIVIFTRFLDKPERSHQTSSSVTTTTSIAAPITPDRSNASSVNEMSPRTPQPFVDYVRRTIDETPYYKREGRRRKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSGAGYGDAYDGFGGSFGVGGGYRSGGAYAGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLSYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGGSSGGAGAGAYQSGYDGSLGGGYGGSSGGPFYGSSRGGYGAGRYHPYGR 2276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02797 2276 Gene3D - 1943 2024 IPR012677 -
Viun4g02797 2276 MobiDBLite consensus disorder prediction 2108 2129 - -
Viun4g02797 2276 SUPERFAMILY RNA-binding domain, RBD 1922 2024 IPR035979 GO:0003676
Viun4g02797 2276 MobiDBLite consensus disorder prediction 2257 2276 - -
Viun4g02797 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1947 2013 IPR000504 GO:0003723
Viun4g02797 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2035 2103 IPR000504 GO:0003723
Viun4g02797 2276 PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED 11 1921 IPR045197 -
Viun4g02797 2276 SMART rrm1_1 1946 2017 IPR000504 GO:0003723
Viun4g02797 2276 SMART rrm1_1 2034 2107 IPR000504 GO:0003723
Viun4g02797 2276 Gene3D - 1555 1630 - -
Viun4g02797 2276 Pfam Bacterial Ig-like domain (group 2) 1147 1207 IPR003343 -
Viun4g02797 2276 Pfam Bacterial Ig-like domain (group 2) 488 535 IPR003343 -
Viun4g02797 2276 SMART bid_2 471 547 IPR003343 -
Viun4g02797 2276 SMART bid_2 1142 1218 IPR003343 -
Viun4g02797 2276 SMART bid_2 1552 1627 IPR003343 -
Viun4g02797 2276 FunFam Heterogeneous nuclear ribonucleoprotein 1 1944 2026 - -
Viun4g02797 2276 Gene3D - 2033 2115 IPR012677 -
Viun4g02797 2276 Gene3D - 451 553 - -
Viun4g02797 2276 CDD RRM2_Hrp1p 2034 2112 - -
Viun4g02797 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2033 2111 IPR000504 GO:0003723
Viun4g02797 2276 SUPERFAMILY Invasin/intimin cell-adhesion fragments 476 549 IPR008964 -
Viun4g02797 2276 SUPERFAMILY RNA-binding domain, RBD 2031 2137 IPR035979 GO:0003676
Viun4g02797 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1945 2021 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02797 Viun-Chr4 42173485 42218263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02797 1947 2112 Eukaryotic Initiation Factors Gene Family AT1G71770 26.136 1.64e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02797 K14314 - gmx:100778001 3372.79