Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02781 ATGGCTTCTTCAAGCTACTCCAATTCTCCATGTGCAGCGTGCAAGTTTCTGAGGAGAAAGTGCATGCCAGATTGCATATTCGCCCCATATTTTCCTCCAGAGGAGCCTCAGAAGTTTGCAAATGTGCACAAGATTTTTGGTGCAAGCAACGTGAGCAAGATTCTGAACGAGGTGCAACCCTATCAGAGAGAGGATGCTGTGAATTCTCTGGCATATGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTCCAAAGACAGGTTCTTAAGCTCCAAAAGGAACTTGATGCTACAAATGCTGATTTGATGATGATGGTGCCAAATAGTAGTAGCAGTAGTAGCAGTGCTCATCTTCACCATGGAGGAAGAAACAAGATGAGTAGTGATGATGATGGTGGTGGTGATGGTGGTGGTTCTTCACATGGTTTAAGCTTCTATTATTCTTCTTCTGCTAATTGGAACAATGATCCTTCTGAAAATGGCTTCCCCAGAGGAGATTTATAA 528 0.4356 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLMMMVPNSSSSSSSAHLHHGGRNKMSSDDDGGGDGGGSSHGLSFYYSSSANWNNDPSENGFPRGDL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02781 175 MobiDBLite consensus disorder prediction 114 149 - -
Viun4g02781 175 Coils Coil 89 109 - -
Viun4g02781 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 122 - -
Viun4g02781 175 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Viun4g02781 175 MobiDBLite consensus disorder prediction 114 129 - -
Viun4g02781 175 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02781 Viun-Chr4 42090750 42092349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02781 4 132 AS2 family AT3G27650 75.969 1.51e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun4g02781 LOB 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02781 - - gmx:100788656 252.677