Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02780 ATGTCTGGGTTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTTGACGCTGAGAAGGGTTTCTCATCGAGTTCAACCTTGGATCCCAGCGATTCTTACACATTTTCGGATGGTGGAACTGTGAACTTGTTGAGTAGATCATATGGGGTTTACAATATCAACGAACTTGGGTTGCAGAAGTGCACATCATCAAGGTCTTTGGATGAAACTGATCACAGTGAGAAAACATATAAGTGTGCTTCCCAAGAAATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATGCATATACCAACACATAGGATTCTGGCATTGAAGAAGATCAATATATTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTTGAATTTCATGGAGCATTTTACACCCCAGATTCCGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCTGATATCTTGAGAATGCATGGAAAGATACCAGAACCTATTCTATCGTTCATGTTTCAGAAGCTACTAAATGGTCTAAGCTATCTGCATGGAGAAAGACATCTTGTTCACAGAGACATAAAGCCTGCCAATCTATTAGTAAATTTGAAGGGAGAGCCAAAAATTACTGACTTTGGAATTAGTGCCGGCTTGGAGAATTCAGTGGCAATGTGTGCTACGTTTGTTGGAACTGTTACATACATGTCACCGGAGAGGATTCGGAATGAAAGCTATTCTTATCCGGCGGATATTTGGAGCCTTGCTCTTGCTCTTCTAGAGTGTGGAACTGGAGAATTCCCATATACAGCTAATGAAGGCCCTGTCAATCTTATGTTGCAGATTCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATTCTTGCCTGCAAAAGGATCCAGACACTAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCTTTTATCAAAAAGTATGAGAATGTAAAGGTAGATTTAGCCGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTATTACTTGCTATTTGATGGGCCTGATGATATGTGGCAACATACAAGGAACTTATATAGTGAAAGCTCGATTTTCAGTTTCTCTGGAAAACAACATTGTGGTCCAAATAACATCTTTACATCTCTATCAAGTATTAGAGCTACACTGGTTGGTGAGTGGCCTCCTGAGAAGTTGGTGCATGTTGTTGAGAAGCTTCAGTGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGAGTGTCAGGATCCTTCATAATTGGAAACCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTACCAAAAGAATGGGCACATTTCATGAACAATTCGTAGTGGAACCCACAGGTCTTATAGGATGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA 1560 0.4128 MSGLEELRKKLAPLFDAEKGFSSSSTLDPSDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDETDHSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHGKIPEPILSFMFQKLLNGLSYLHGERHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLALALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDSCLQKDPDTRPTAEQLLLHPFIKKYENVKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDMWQHTRNLYSESSIFSFSGKQHCGPNNIFTSLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIATKRMGTFHEQFVVEPTGLIGCYSIVKQELYINQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02780 519 SUPERFAMILY NTF2-like 365 462 IPR032710 -
Viun4g02780 519 CDD PKc_MAPKK_plant_like 85 345 - -
Viun4g02780 519 SUPERFAMILY Protein kinase-like (PK-like) 86 392 IPR011009 -
Viun4g02780 519 FunFam mitogen-activated protein kinase kinase 3 166 362 - -
Viun4g02780 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Viun4g02780 519 Gene3D Phosphorylase Kinase; domain 1 52 165 - -
Viun4g02780 519 Gene3D - 366 517 - -
Viun4g02780 519 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02780 519 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Viun4g02780 519 SMART serkin_6 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02780 519 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
Viun4g02780 519 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02780 519 FunFam Mitogen-activated protein kinase kinase 3 364 518 - -
Viun4g02780 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 517 IPR018222 -
Viun4g02780 519 FunFam mitogen-activated protein kinase kinase 3 56 165 - -
Viun4g02780 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 23 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02780 Viun-Chr4 42077632 42081738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02780 35 519 MAP Kinase Kinase Gene Family AT5G40440 78.144 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun4g02780 Pkinase 2.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02780 K20607 - gmx:100784935 969.918