Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02779 ATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATGCATATACCAACACATAGGATTCTGGCATTGAAGAAGATCAATATATTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTTGAATTTCATGGAGCATTTTACACCCCAGATTCCGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCTGATATCTTGAGAATGCATGGAAAGATACCAGAACCTATTCTATCGTTCATGTTTCAGAAGCTACTAAATGGTCTAAGCTATCTGCATGGAGAAAGACATCTTGTTCACAGAGACATAAAGCCTGCCAATCTATTAGTAAATTTGAAGGGAGAGCCAAAAATTACTGACTTTGGAATTAGTGCCGGCTTGGAGAATTCAGTGGCAATGTGTGCTACGTTTGTTGGAACTGTTACATACATGTCACCGGAGAGGATTCGGAATGAAAGCTATTCTTATCCGGCGGATATTTGGAGCCTTGCTCTTGCTCTTCTAGAGTGTGGAACTGGAGAATTCCCATATACAGCTAATGAAGGCCCTGTCAATCTTATGTTGCAGATTCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATTCTTGCCTGCAAAAGGATCCAGACACTAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCTTTTATCAAAAAGTATGAGAATGTAAAGGTAGATTTAGCCGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTATTACTTGCTATTTGATGGGCCTGATGATATGTGGCAACATACAAGGAACTTATATAGTGAAAGCTCGATTTTCAGTTTCTCTGGAAAACAACATTGTGGTCCAAATAACATCTTTACATCTCTATCAAGTATTAGAGCTACACTGGTTGGTGAGTGGCCTCCTGAGAAGTTGGTGCATGTTGTTGAGAAGCTTCAGTGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGAGTGTCAGGATCCTTCATAATTGGAAACCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTACCAAAAGAATGGGCACATTTCATGAACAATTCGTAGTGGAACCCACAGGTCTTATAGGATGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA 1311 0.4111 MRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHGKIPEPILSFMFQKLLNGLSYLHGERHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLALALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDSCLQKDPDTRPTAEQLLLHPFIKKYENVKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDMWQHTRNLYSESSIFSFSGKQHCGPNNIFTSLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIATKRMGTFHEQFVVEPTGLIGCYSIVKQELYINQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02779 436 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Viun4g02779 436 FunFam mitogen-activated protein kinase kinase 3 1 82 - -
Viun4g02779 436 FunFam Mitogen-activated protein kinase kinase 3 281 435 - -
Viun4g02779 436 SUPERFAMILY NTF2-like 282 379 IPR032710 -
Viun4g02779 436 FunFam mitogen-activated protein kinase kinase 3 83 279 - -
Viun4g02779 436 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02779 436 ProSiteProfiles Nuclear transport factor 2 domain profile. 284 434 IPR018222 -
Viun4g02779 436 CDD PKc_MAPKK_plant_like 2 262 - -
Viun4g02779 436 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 3 315 - -
Viun4g02779 436 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Viun4g02779 436 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
Viun4g02779 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Viun4g02779 436 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02779 436 Gene3D - 276 434 - -
Viun4g02779 436 SMART serkin_6 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02779 436 Gene3D Transferase(Phosphotransferase) domain 1 77 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02779 Viun-Chr4 42077632 42081738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02779 1 436 MAP Kinase Kinase Gene Family AT5G40440 78.211 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun4g02779 Pkinase 1.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02779 K20607 - gmx:100784935 823.157