Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02778 ATGTCTGGGTTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTTGACGCTGAGAAGGGTTTCTCATCGAGTTCAACCTTGGATCCCAGCGATTCTTACACATTTTTTCCTTATTGTGTTTTTGGGTTTTGGTTGATTGGTTCAATTGACAAGTTTTCGGATGGTGGAACTGTGAACTTGTTGAGTAGATCATATGGGGTTTACAATATCAACGAACTTGGGTTGCAGAAGTGCACATCATCAAGGTCTTTGGATGAAACTGATCACAGTGAGAAAACATATAAGTGTGCTTCCCAAGAAATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATGCATATACCAACACATAGGATTCTGGCATTGAAGAAGATCAATATATTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTTGAATTTCATGGAGCATTTTACACCCCAGATTCCGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCTGATATCTTGAGAATGCATGGAAAGATACCAGAACCTATTCTATCGTTCATGTTTCAGAAGCTACTAAATGGTCTAAGCTATCTGCATGGAGAAAGACATCTTGTTCACAGAGACATAAAGCCTGCCAATCTATTAGTAAATTTGAAGGGAGAGCCAAAAATTACTGACTTTGGAATTAGTGCCGGCTTGGAGAATTCAGTGGCAATGTGTGCTACGTTTGTTGGAACTGTTACATACATGTCACCGGAGAGGATTCGGAATGAAAGCTATTCTTATCCGGCGGATATTTGGAGCCTTGCTCTTGCTCTTCTAGAGTGTGGAACTGGAGAATTCCCATATACAGCTAATGAAGGCCCTGTCAATCTTATGTTGCAGATTCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATTCTTGCCTGCAAAAGGATCCAGACACTAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCTTTTATCAAAAAGTATGAGAATGTAAAGGTAGATTTAGCCGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTATTACTTGCTATTTGATGGGCCTGATGATATGTGGCAACATACAAGGAACTTATATAGTGAAAGCTCGATTTTCAGTTTCTCTGGAAAACAACATTGTGGTCCAAATAACATCTTTACATCTCTATCAAGTATTAGAGCTACACTGGTTGGTGAGTGGCCTCCTGAGAAGTTGGTGCATGTTGTTGAGAAGCTTCAGTGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGAGTGTCAGGATCCTTCATAATTGGAAACCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTACCAAAAGAATGGGCACATTTCATGAACAATTCGTAGTGGAACCCACAGGTCTTATAGGATGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA 1611 0.4097 MSGLEELRKKLAPLFDAEKGFSSSSTLDPSDSYTFFPYCVFGFWLIGSIDKFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDETDHSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHGKIPEPILSFMFQKLLNGLSYLHGERHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLALALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDSCLQKDPDTRPTAEQLLLHPFIKKYENVKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDMWQHTRNLYSESSIFSFSGKQHCGPNNIFTSLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIATKRMGTFHEQFVVEPTGLIGCYSIVKQELYINQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02778 536 FunFam mitogen-activated protein kinase kinase 3 183 379 - -
Viun4g02778 536 Gene3D Transferase(Phosphotransferase) domain 1 183 382 - -
Viun4g02778 536 ProSiteProfiles Protein kinase domain profile. 101 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02778 536 ProSiteProfiles Nuclear transport factor 2 domain profile. 384 534 IPR018222 -
Viun4g02778 536 FunFam mitogen-activated protein kinase kinase 3 73 182 - -
Viun4g02778 536 CDD PKc_MAPKK_plant_like 102 362 - -
Viun4g02778 536 Gene3D - 383 534 - -
Viun4g02778 536 SUPERFAMILY Protein kinase-like (PK-like) 103 409 IPR011009 -
Viun4g02778 536 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Viun4g02778 536 SMART serkin_6 101 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02778 536 Pfam Protein kinase domain 105 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02778 536 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 55 415 - -
Viun4g02778 536 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Viun4g02778 536 FunFam Mitogen-activated protein kinase kinase 3 381 535 - -
Viun4g02778 536 SUPERFAMILY NTF2-like 382 479 IPR032710 -
Viun4g02778 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02778 Viun-Chr4 42077632 42081740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02778 51 536 MAP Kinase Kinase Gene Family AT5G40440 78.189 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun4g02778 Pkinase 2.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02778 K20607 - gmx:100784935 959.133