Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02770 ATGGTTTTCAAATGTCACAAGAACAAGTGCAAGATTGCATCTTTTGATGTTGTGATCTTCACAGTGGCCACCCTCTTGTGTTTCTCGCACTCAGCACTATCTGATCCAAGAATCTCTGAAGTGGGGTTGCACTGTGGCACTCACAGGGCATCACCAAGTGGAAGCTACGTTCCCATTTTCACCAAAGAAATGGAAAAGCTTCAAGAGCTTGTGAGCAAAAACAACTGGGGCACTCACTCTGAGGAGCTCTCATCAACCACTCCAATCTATGGTTTGGCACAGTGCTTCCAAGACCTTTCAAATCTTGATTGTCTTCAGTGTTTTGCAGCTAGCCGCACCAAGCTACCTCGTTGTCTCCCTTCAGTTTCTGGTCACATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACACTGAGGAGAGTGACCCTTTGAGGGATACTGTGAACTGCACCACACAGTATGGTGCTGTGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGGAAGAGTGTTGGTAAAGTGGTTGAGAATGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAAGTGTGGGAGAAAAAGGGTGTGGTGATTGCTTGAAGAAAGCTGAAAATGAGGTTAAAGGGTGCTTGCCTAAGAAGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATTTTCCACTGTTAAGTTCTTCAATCAAGGTGGTGAACATGGAGATGGAGATGATTCTTCTAGAAAACGAGCCATCATTACAGCAGTCTCAGTCTTGGCTGCAATTGTTGTAGTTCTCTCTATCTTGGTCTCTTGTGTGGCCTTCACCAAAAAGAGAAAAAAAAACAATTTCATTGAGATTCCCTCTTATCTGAGGAATTCTAGCTTGAATTACAAGTATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCACCCCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTGTTCAAAGGGACTCTCCCAAATGGAAAAGATGTTGCTGTCAAGAGATTGGTCTTCAACAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATAAATCACAAGAACCTTGTCAAGCTTTTGGGTTGCAGCATTGAAGGCCCTGAAAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGACCATTTCATTTTTGAAAAGGACAAAACAAGGATTCTGAAATGGAAGCAGAGGTTTGAAATAATTCTTGGGATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATAAAAAGTAGCAATGTTCTTCTTGATGAGAATCTGAACCCTAAGATTGCAGATTTTGGCCTTGCAAGGTGTCTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTCATTCAAGGACAACTCACAGATAAAGCAGATGTATATAGTTTTGGAGTGCTTGTTCTTGAGACTGCAAGTGGCAGAAAGAACAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGCTGAAGCTGTTGATCCATGTTTGGGAGATGATTTTCCTGAAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTCTGCACACAAGCTTCTGCTTCTCTTAGGCCATCCATGGCTCAAGTTGCTTGCATGTTAAGCAATTCAAATCTGGATGTGCCTATACCAAAACAACCTCCATTTTTGAACTCTAGATTGTTAAGTCAAACAGCTCCTTTAGGTTTTAGCATAGATAACTCCTCATCAAACACATTTCAAAAGATTGGTGTGTCCTATAGTCCCTCTCAGTCCTCTAGTTCATGCAGTTTGATTAGGCCATCCAAAAGTGAAGAAACAATTTTGGAAGCTTGA 2001 0.4258 MVFKCHKNKCKIASFDVVIFTVATLLCFSHSALSDPRISEVGLHCGTHRASPSGSYVPIFTKEMEKLQELVSKNNWGTHSEELSSTTPIYGLAQCFQDLSNLDCLQCFAASRTKLPRCLPSVSGHIYLDGCFLRYDNYSFYTEESDPLRDTVNCTTQYGAVAGEAERLVFGKSVGKVVENVVRVAVNEGRGFAVGEGEGVYALAQCWKSVGEKGCGDCLKKAENEVKGCLPKKEGRALNSGCYLRFSTVKFFNQGGEHGDGDDSSRKRAIITAVSVLAAIVVVLSILVSCVAFTKKRKKNNFIEIPSYLRNSSLNYKYETLEKATDYFSTPRKIGQGGAGSVFKGTLPNGKDVAVKRLVFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFIFEKDKTRILKWKQRFEIILGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCLGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLETASGRKNNVFREDSGSLLQTVWKLYQSNRLAEAVDPCLGDDFPEREASRVFQIGLLCTQASASLRPSMAQVACMLSNSNLDVPIPKQPPFLNSRLLSQTAPLGFSIDNSSSNTFQKIGVSYSPSQSSSSCSLIRPSKSEETILEA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02770 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Viun4g02770 666 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Viun4g02770 666 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02770 666 FunFam Cysteine-rich receptor-like protein kinase 2 294 403 - -
Viun4g02770 666 MobiDBLite consensus disorder prediction 644 666 - -
Viun4g02770 666 Pfam Protein tyrosine and serine/threonine kinase 331 593 IPR001245 GO:0004672|GO:0006468
Viun4g02770 666 Pfam Salt stress response/antifungal 60 138 IPR002902 -
Viun4g02770 666 Pfam Salt stress response/antifungal 169 248 IPR002902 -
Viun4g02770 666 FunFam Cysteine-rich receptor-like protein kinase 2 38 140 - -
Viun4g02770 666 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Viun4g02770 666 Gene3D - 41 140 IPR038408 -
Viun4g02770 666 Gene3D - 162 251 IPR038408 -
Viun4g02770 666 ProSiteProfiles Gnk2-homologous domain profile. 149 251 IPR002902 -
Viun4g02770 666 ProSiteProfiles Gnk2-homologous domain profile. 38 140 IPR002902 -
Viun4g02770 666 SUPERFAMILY Protein kinase-like (PK-like) 314 616 IPR011009 -
Viun4g02770 666 FunFam Cysteine-rich receptor-like protein kinase 2 404 604 - -
Viun4g02770 666 FunFam Cysteine-rich receptor-like protein kinase 3 152 251 - -
Viun4g02770 666 CDD STKc_IRAK 334 596 - -
Viun4g02770 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 621 - -
Viun4g02770 666 SMART serkin_6 328 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02770 Viun-Chr4 42025477 42029489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02770 17 493 Receptor kinase-like Gene Family AT5G40380 53.623 3.85e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun4g02770 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02770 - - gmx:100819689 1089.33