Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02765 ATGTTCCACCACACTAACACCTTCAACCTTTTTCAATACCCCAACATGAACATCAACATGAACATGAACATGTCTATTTGTCACCCTACTTCTATGATGGAGGCTCATTCCAATTCTGATACTATTAAGAACCTAAATATGAGTCTAAGTTCCACATCGACTAAAAATGAGAAAGTAAAACGGTTAACTGTTACCACACCTTTCGACGGAGGATCATCCCTTGGAGGCTTTGCTAATGATCACTGTCGCCATTCTGTGACGTTGGAACCAAACAAAACAACCATTGATGCTTTGCATGGGTACGAGAAAAACACCGTCATATGTAAATTTTCACAGAAAACCATGTTGGTTCATCCATCTCAAGCTTCATCTTCCAAATCATTACCCTTTTCTCTTTTTAACAAGTGTGAATTATTGATGAGTGAATGTCCCTGGAACAGTAATCAAAATGCAGAGGTGAAAAAGGATACCAACATTGCTAATCATGACATAATCAAAGGGCAATGGACTCCTGAAGAAGATAGAGCTCTTGTGGAATTGGTGAATCAATGGGGAACCAAGAAATGGACACAAATTGCAAGATCAATAGAGGGCAGAATTGGGAAGCAATGTCGAGAAAGATGGAATAACCATCTTCAGCCAAACATTAAGAAGGGATCATGGAGTTTGGAGGAAGACATGATTTTGATCAAAGGGCATCAAGAATTTGGAACAAAATGGTCGAAGATTGCAAAGAGAATGTGTGGTCGGAGTGAGAATGATATAAAGAATCGTTGGAATGCCACCATGCGACGCCAAAACTGCAACAAGAACAACCAAGGTAACTACAAAGGCTCAATGCTCCATGCCTATGTTAAATGGGTCACTGCAACCCAACAATCTGCAAAACTTCTCTCAAACAAAAACAATCAAAATGTGCTTGGATGCAGTTGTGATGAGCTGGCTCTTTTGTTGACCTAG 960 0.399 MFHHTNTFNLFQYPNMNINMNMNMSICHPTSMMEAHSNSDTIKNLNMSLSSTSTKNEKVKRLTVTTPFDGGSSLGGFANDHCRHSVTLEPNKTTIDALHGYEKNTVICKFSQKTMLVHPSQASSSKSLPFSLFNKCELLMSECPWNSNQNAEVKKDTNIANHDIIKGQWTPEEDRALVELVNQWGTKKWTQIARSIEGRIGKQCRERWNNHLQPNIKKGSWSLEEDMILIKGHQEFGTKWSKIAKRMCGRSENDIKNRWNATMRRQNCNKNNQGNYKGSMLHAYVKWVTATQQSAKLLSNKNNQNVLGCSCDELALLLT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02765 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 267 IPR017930 -
Viun4g02765 319 SMART sant 165 214 IPR001005 -
Viun4g02765 319 SMART sant 217 265 IPR001005 -
Viun4g02765 319 Gene3D - 220 282 - -
Viun4g02765 319 PANTHER MYB PROTEIN-RELATED 134 289 - -
Viun4g02765 319 ProSiteProfiles Myb-like domain profile. 161 212 IPR001005 -
Viun4g02765 319 FunFam Transcriptional activator Myb isoform A 165 217 - -
Viun4g02765 319 Pfam Myb-like DNA-binding domain 169 226 - -
Viun4g02765 319 Gene3D - 165 217 - -
Viun4g02765 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 216 IPR017930 -
Viun4g02765 319 ProSiteProfiles Myb-like domain profile. 213 263 IPR001005 -
Viun4g02765 319 CDD SANT 220 260 IPR001005 -
Viun4g02765 319 CDD SANT 169 212 IPR001005 -
Viun4g02765 319 SUPERFAMILY Homeodomain-like 163 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02765 Viun-Chr4 41975229 41977714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02765 164 286 MYB Transcription Factor Family AT4G18770 56.452 2.08e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g02765 Myb_DNA-bind_6 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02765 K09422 - vra:111242362 404.445