Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02756 ATGGCCGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACACTTCCTAAACCATGGAAGGGACTTGTGGATGGCAAGACGGGGTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGACCCTCGAGCTCAGCTGCCCCACCAAAGTCCTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATGCGTCTCAAGGGTTGCAACGTGGTCGCAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGATGCTGGATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCCCATAGTGTGCCAACTGGAACGAATGCTGCTGCCAATGCTAGTTATTCTGTCAAAGGTCAGGGGGCATCGGATGCTGCGGCTGTGCTATCTCCAGAATCTTATCGAAGTCGGCATGAAATAACTGTGACCGGAGACAATGTGCCACCACCTCTTACTTCATTTGGGTCTTCTACTGGCTTTCCACCGGAGGTTTTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATCCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATGCCCGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTAGGAAAATAGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTGGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAAAATATTTTAAGGTCACAGGATCAAGGATCAAAGATAATTATTTTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTACTCTGACACGTCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCAACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTTCGTGATATGTCATCGCGTGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCGGTGATTCTGGATACGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTGACTATGGAGGATACGGTGGAAGAGGTAGTGATTCAAATTATGGATCTAGGGGGACTGCTTCTTCTGGCAGAGGAGGCCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCCGAGTCCAGAAAAGGGATCTAAATGGAGTGATCGCTACAAAAGCGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCTGCACTACCTCAACATTCGCAAAGCAGCTTTCACAAGTCAATGATGGAACGTGGTGGATGGGGGGGTGATAGTGATCGCAATAAGAGCTCTAACAGAGATCGAAGCCGCAGTCCTAGCCCCTATAGACAGGAAAGGACCGCAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGATGGGACAAGGTCAATCCTCCCCACCACGGCAGCGTGCACGCAGTCCTCCAAAAGAGTGGGGAGGTGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATGATAGGTCAAGGTGGTGATTAG 2271 0.4861 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHASQGLQRGRSPDFSDRYDRNGSGGSNDAGSRNNQSSKGGSYSSHSVPTGTNAAANASYSVKGQGASDAAAVLSPESYRSRHEITVTGDNVPPPLTSFGSSTGFPPEVLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLMPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGDYGGYGGRGSDSNYGSRGTASSGRGGRGFDYDSQRNDRGPSPEKGSKWSDRYKSVNRERSRSPDRAAALPQHSQSSFHKSMMERGGWGGDSDRNKSSNRDRSRSPSPYRQERTAAVRERSPVHSFHRSMMGQGQSSPPRQRARSPPKEWGGGEVEEGMIPEEDGMIGQGGD 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02756 756 SMART ww_5 20 53 IPR001202 GO:0005515
Viun4g02756 756 CDD SF2_C_DEAD 387 516 - -
Viun4g02756 756 MobiDBLite consensus disorder prediction 91 120 - -
Viun4g02756 756 SMART ultradead3 187 390 IPR014001 -
Viun4g02756 756 MobiDBLite consensus disorder prediction 155 175 - -
Viun4g02756 756 FunFam ATP-dependent RNA helicase RhlB 377 549 - -
Viun4g02756 756 Gene3D - 17 64 - -
Viun4g02756 756 MobiDBLite consensus disorder prediction 538 756 - -
Viun4g02756 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 524 IPR027417 -
Viun4g02756 756 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Viun4g02756 756 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Viun4g02756 756 Gene3D - 378 549 IPR027417 -
Viun4g02756 756 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 546 - -
Viun4g02756 756 SMART helicmild6 427 507 IPR001650 -
Viun4g02756 756 MobiDBLite consensus disorder prediction 670 709 - -
Viun4g02756 756 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Viun4g02756 756 MobiDBLite consensus disorder prediction 1 27 - -
Viun4g02756 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 546 IPR001650 -
Viun4g02756 756 MobiDBLite consensus disorder prediction 47 81 - -
Viun4g02756 756 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Viun4g02756 756 Gene3D - 143 377 IPR027417 -
Viun4g02756 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Viun4g02756 756 Pfam DEAD/DEAH box helicase 192 362 IPR011545 GO:0003676|GO:0005524
Viun4g02756 756 CDD WW 22 50 IPR001202 GO:0005515
Viun4g02756 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 373 IPR014001 -
Viun4g02756 756 MobiDBLite consensus disorder prediction 47 120 - -
Viun4g02756 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 319 327 IPR000629 -
Viun4g02756 756 FunFam probable ATP-dependent RNA helicase DDX17 139 376 - -
Viun4g02756 756 MobiDBLite consensus disorder prediction 712 726 - -
Viun4g02756 756 MobiDBLite consensus disorder prediction 615 650 - -
Viun4g02756 756 Pfam WW domain 21 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02756 Viun-Chr4 41936547 41942115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02756 165 545 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 4.78e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02756 K12823 - gmx:100816455 1135.17