Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02742 ATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCTGGGGGTTCTTGCCTCCATATAATGAAATCTGCCTATCCGGAAGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCGGGAAATATTCTGCTTGATTCTAATGGTGCTGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGACAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTTTTCAAACATGCACGCGCTAGCAAATATCTTGCTCGCACCATTCTAGAAGGGCTGGCTCCTTTAGGAGATCGTTTTAGATCGCTGAAGGCTAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAAGAAGGAAAAAGTCAGATCGGATGACTTCAGGGATTCTGCAGAGACGTTATCATCTGTAACAGCTAATCATTCAGATGATGCACCCATTCAGAACAAGGAGGATGGATTTAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAACAGTCCAAGAGATCTGGATCAGGATTATGCAAATGAAAGTTCTGGGCCAAGTTCTTCATTACAACAAAACGCCAACAATCAGCAAAAAAAGTTTCCGAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTTACTGATGGGGACAGGGATTACCTACAAACAAAGTATTCTTCGGAGAGGAATCACAGTGGACCATTGCAATATCGACAAAAGAGAGATACCAACAACCTTCCATTGGTTGATGACCCATCAGATGGAGCGTTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACATCGGCTGATCTCAATCCAATGGGTCCTTCAAACAATGCTTCTGGCCCAGTTGTCAGTCCTACCAGTCCACCAAATCAAAATTTCATGGCTGGTGCCATTCTTCCATCGCTTCAGTGCATCTTGCAACAGAATGGTTTGCAAAGGGAAGAGATTATAAAATTAATAAAGTATGCAGAGCAGTCTTCTGGTAAAAATGCAGAACCAGTGGAGGCAGGGGCAGTTGATAGTTTGCAGGTACCTGCAACAAACAGGGAGAAGGAGCTGCATTTTCAGGTGGTTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTACAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAGTTGAGCAGTATGATTAACAAAATGGAGAAGTGA 1812 0.41 MSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFKHARASKYLARTILEGLAPLGDRFRSLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDKKEKVRSDDFRDSAETLSSVTANHSDDAPIQNKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNNSPRDLDQDYANESSGPSSSLQQNANNQQKKFPSGSLLPDNFLFPKKVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNLPLVDDPSDGAFVQRRGRFKVTSADLNPMGPSNNASGPVVSPTSPPNQNFMAGAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNAEPVEAGAVDSLQVPATNREKELHFQVVQLQQSIGSLVEELQRQKMKNVQLEKQLSSMINKMEK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02742 603 MobiDBLite consensus disorder prediction 433 450 - -
Viun4g02742 603 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02742 603 Pfam Protein kinase domain 3 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02742 603 MobiDBLite consensus disorder prediction 287 338 - -
Viun4g02742 603 Gene3D Transferase(Phosphotransferase) domain 1 32 257 - -
Viun4g02742 603 MobiDBLite consensus disorder prediction 430 495 - -
Viun4g02742 603 SUPERFAMILY Protein kinase-like (PK-like) 1 236 IPR011009 -
Viun4g02742 603 MobiDBLite consensus disorder prediction 478 495 - -
Viun4g02742 603 MobiDBLite consensus disorder prediction 370 409 - -
Viun4g02742 603 SMART serkin_6 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02742 603 MobiDBLite consensus disorder prediction 375 406 - -
Viun4g02742 603 MobiDBLite consensus disorder prediction 292 313 - -
Viun4g02742 603 Coils Coil 573 600 - -
Viun4g02742 603 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 584 IPR047173 GO:0043539
Viun4g02742 603 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Viun4g02742 603 FunFam serine/threonine-protein kinase BLUS1 isoform X1 32 265 - -
Viun4g02742 603 MobiDBLite consensus disorder prediction 314 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02742 Viun-Chr4 41772259 41786276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02742 1 600 MAP Kinase Kinase Kinase Kinase AT5G14720 64.160 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Viun4g02742 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02742 K08835 - gmx:100784402 1084.71